Resource

Id summary/liu2026Multiomics/atac_fragments/T304_b12_Lung_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T304_b12_Lung_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 12
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T304_b12_Lung_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T304
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL86_G12+B10+B10, CL86_G12+B10+G09, CL81_G09+B11+B05, CL84_G05+D06+H05, CL87_G09+B08+C12 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 13]
n
352,648,833
mean
1.2
sd
0.512

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 352648833
chr1 31506118
chr1_KI270706v1_random 2621
chr1_KI270707v1_random 363
chr1_KI270708v1_random 1661
chr1_KI270709v1_random 2210
chr1_KI270710v1_random 444
chr1_KI270711v1_random 996
chr1_KI270712v1_random 1447
chr1_KI270713v1_random 12106
chr1_KI270714v1_random 2033
chr2 27155834
chr2_KI270715v1_random 110
chr2_KI270716v1_random 238
chr3 22178674
chr3_GL000221v1_random 334
chr4 17131374
chr4_GL000008v2_random 4027
chr5 18177269
chr5_GL000208v1_random 1382
chr6 19933863
chr7 17919189
chr8 15257064
chr9 15178653
chr9_KI270717v1_random 205
chr9_KI270718v1_random 322
chr9_KI270719v1_random 2416
chr9_KI270720v1_random 851
chr10 16336148
chr11 18673174
chr11_KI270721v1_random 1551
chr12 16798886
chr13 9051449
chr14 11364717
chr14_GL000009v2_random 2672
chr14_GL000194v1_random 2221
chr14_GL000225v1_random 9599
chr14_KI270722v1_random 3394
chr14_KI270723v1_random 914
chr14_KI270724v1_random 1106
chr14_KI270725v1_random 1740
chr14_KI270726v1_random 936
chr15 10382666
chr15_KI270727v1_random 890
chr16 12631326
chr16_KI270728v1_random 6748
chr17 16792745
chr17_GL000205v2_random 24340
chr17_KI270729v1_random 3899
chr17_KI270730v1_random 1100
chr18 7705196
chr19 16074956
chr20 8715264
chr21 4086839
chr22 7113523
chr22_KI270731v1_random 1114
chr22_KI270732v1_random 1203
chr22_KI270733v1_random 125803
chr22_KI270734v1_random 1700
chr22_KI270735v1_random 1559
chr22_KI270736v1_random 2884
chr22_KI270737v1_random 487
chr22_KI270738v1_random 1388
chr22_KI270739v1_random 30
chrM 4043109
chrUn_GL000195v1 23505
chrUn_GL000213v1 155
chrUn_GL000214v1 991
chrUn_GL000216v2 5188
chrUn_GL000218v1 2711
chrUn_GL000219v1 21916
chrUn_GL000220v1 6836
chrUn_GL000224v1 5168
chrUn_GL000226v1 1
chrUn_KI270302v1 7
chrUn_KI270303v1 5
chrUn_KI270304v1 3
chrUn_KI270305v1 7
chrUn_KI270310v1 14
chrUn_KI270311v1 8
chrUn_KI270312v1 1
chrUn_KI270315v1 4
chrUn_KI270316v1 1
chrUn_KI270317v1 6
chrUn_KI270320v1 56
chrUn_KI270322v1 40
chrUn_KI270330v1 204
chrUn_KI270333v1 84
chrUn_KI270336v1 60
chrUn_KI270337v1 93
chrUn_KI270362v1 21
chrUn_KI270363v1 13
chrUn_KI270364v1 1
chrUn_KI270366v1 11
chrUn_KI270382v1 1
chrUn_KI270384v1 2
chrUn_KI270385v1 4
chrUn_KI270386v1 1
chrUn_KI270388v1 1
chrUn_KI270392v1 2
chrUn_KI270395v1 2
chrUn_KI270396v1 1
chrUn_KI270411v1 3
chrUn_KI270412v1 2
chrUn_KI270414v1 2
chrUn_KI270417v1 40
chrUn_KI270418v1 14
chrUn_KI270419v1 6
chrUn_KI270420v1 25
chrUn_KI270422v1 11
chrUn_KI270423v1 4
chrUn_KI270424v1 5
chrUn_KI270425v1 2
chrUn_KI270429v1 64
chrUn_KI270435v1 1419
chrUn_KI270438v1 11709
chrUn_KI270442v1 11445
chrUn_KI270448v1 194
chrUn_KI270465v1 22
chrUn_KI270466v1 838
chrUn_KI270467v1 2698
chrUn_KI270468v1 122
chrUn_KI270507v1 206
chrUn_KI270508v1 120
chrUn_KI270509v1 79
chrUn_KI270510v1 70
chrUn_KI270511v1 150
chrUn_KI270512v1 281
chrUn_KI270515v1 244
chrUn_KI270516v1 54
chrUn_KI270517v1 131
chrUn_KI270518v1 84
chrUn_KI270519v1 2134
chrUn_KI270521v1 87
chrUn_KI270522v1 40
chrUn_KI270529v1 2
chrUn_KI270530v1 5
chrUn_KI270538v1 2034
chrUn_KI270539v1 29
chrUn_KI270544v1 6
chrUn_KI270579v1 11
chrUn_KI270580v1 90
chrUn_KI270581v1 4
chrUn_KI270582v1 22
chrUn_KI270583v1 60
chrUn_KI270584v1 176
chrUn_KI270587v1 60
chrUn_KI270588v1 173
chrUn_KI270589v1 251
chrUn_KI270590v1 121
chrUn_KI270591v1 293
chrUn_KI270593v1 64
chrUn_KI270741v1 106
chrUn_KI270742v1 1969
chrUn_KI270743v1 1881
chrUn_KI270744v1 4348
chrUn_KI270745v1 224
chrUn_KI270746v1 1847
chrUn_KI270747v1 207
chrUn_KI270748v1 210
chrUn_KI270749v1 1715
chrUn_KI270750v1 2588
chrUn_KI270751v1 2327
chrUn_KI270753v1 201
chrUn_KI270754v1 743
chrUn_KI270755v1 325
chrUn_KI270756v1 592
chrUn_KI270757v1 850
chrX 7696845
chrY 389742
chrY_KI270740v1_random 203

Fragment lengths

fragments min max mean median
fragments 352648833 7 1992 234.35 182
global fragment-length histogram

Files

Filename Size md5
T304_b12_Lung_PCW21.fragments.tsv.gz 3.11 GB 8d6da5df610ca12ca95baae7c81cdc39
T304_b12_Lung_PCW21.fragments.tsv.gz.tbi 1.35 MB ecfbba977976253b470176afeceab6aa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 28248459dd4f13bdc51c892a1a161966
statistics/