Resource

Id summary/liu2026Multiomics/atac_fragments/T30_b11_Heart_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T30_b11_Heart_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T30_b11_Heart_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T30
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL75_C11+H04+E11, CL78_C11+B01+H04, CL79_C06+A08+E02, CL77_C06+A12+F01, CL73_C01+D06+D07 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 13]
n
357,803,057
mean
1.22
sd
0.534

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 357803057
chr1 32940959
chr1_KI270706v1_random 1442
chr1_KI270707v1_random 211
chr1_KI270708v1_random 457
chr1_KI270709v1_random 1207
chr1_KI270710v1_random 194
chr1_KI270711v1_random 602
chr1_KI270712v1_random 780
chr1_KI270713v1_random 15948
chr1_KI270714v1_random 1584
chr2 27771268
chr2_KI270715v1_random 46
chr2_KI270716v1_random 161
chr3 23219555
chr3_GL000221v1_random 269
chr4 17810635
chr4_GL000008v2_random 2217
chr5 19755240
chr5_GL000208v1_random 858
chr6 20280660
chr7 17889072
chr8 15659712
chr9 14467824
chr9_KI270717v1_random 194
chr9_KI270718v1_random 100
chr9_KI270719v1_random 1145
chr9_KI270720v1_random 526
chr10 17095656
chr11 18409994
chr11_KI270721v1_random 1598
chr12 17188562
chr13 9326141
chr14 10866039
chr14_GL000009v2_random 1428
chr14_GL000194v1_random 1392
chr14_GL000225v1_random 5812
chr14_KI270722v1_random 1234
chr14_KI270723v1_random 418
chr14_KI270724v1_random 356
chr14_KI270725v1_random 875
chr14_KI270726v1_random 231
chr15 11357607
chr15_KI270727v1_random 251
chr16 11359462
chr16_KI270728v1_random 690
chr17 15623067
chr17_GL000205v2_random 25432
chr17_KI270729v1_random 3232
chr17_KI270730v1_random 756
chr18 7838492
chr19 14601031
chr20 8469279
chr21 3608466
chr22 6804793
chr22_KI270731v1_random 280
chr22_KI270732v1_random 646
chr22_KI270733v1_random 45361
chr22_KI270734v1_random 653
chr22_KI270735v1_random 941
chr22_KI270736v1_random 2237
chr22_KI270737v1_random 291
chr22_KI270738v1_random 758
chr22_KI270739v1_random 14
chrM 7648740
chrUn_GL000195v1 31249
chrUn_GL000213v1 93
chrUn_GL000214v1 489
chrUn_GL000216v2 2555
chrUn_GL000218v1 1323
chrUn_GL000219v1 20492
chrUn_GL000220v1 6847
chrUn_GL000224v1 2581
chrUn_GL000226v1 2
chrUn_KI270302v1 8
chrUn_KI270303v1 8
chrUn_KI270304v1 5
chrUn_KI270305v1 5
chrUn_KI270310v1 35
chrUn_KI270311v1 8
chrUn_KI270315v1 1
chrUn_KI270316v1 1
chrUn_KI270317v1 1
chrUn_KI270320v1 32
chrUn_KI270322v1 40
chrUn_KI270330v1 81
chrUn_KI270333v1 60
chrUn_KI270336v1 24
chrUn_KI270337v1 117
chrUn_KI270362v1 9
chrUn_KI270363v1 13
chrUn_KI270366v1 5
chrUn_KI270382v1 3
chrUn_KI270385v1 1
chrUn_KI270388v1 1
chrUn_KI270390v1 3
chrUn_KI270393v1 6
chrUn_KI270411v1 6
chrUn_KI270412v1 4
chrUn_KI270414v1 5
chrUn_KI270417v1 27
chrUn_KI270418v1 7
chrUn_KI270419v1 4
chrUn_KI270420v1 17
chrUn_KI270422v1 13
chrUn_KI270423v1 3
chrUn_KI270425v1 1
chrUn_KI270429v1 66
chrUn_KI270435v1 910
chrUn_KI270438v1 11638
chrUn_KI270442v1 7006
chrUn_KI270448v1 110
chrUn_KI270465v1 32
chrUn_KI270466v1 640
chrUn_KI270467v1 1975
chrUn_KI270468v1 85
chrUn_KI270507v1 111
chrUn_KI270508v1 65
chrUn_KI270509v1 66
chrUn_KI270510v1 49
chrUn_KI270511v1 94
chrUn_KI270512v1 191
chrUn_KI270515v1 151
chrUn_KI270516v1 43
chrUn_KI270517v1 76
chrUn_KI270518v1 31
chrUn_KI270519v1 1497
chrUn_KI270521v1 52
chrUn_KI270522v1 22
chrUn_KI270529v1 4
chrUn_KI270530v1 5
chrUn_KI270538v1 1140
chrUn_KI270539v1 3
chrUn_KI270544v1 4
chrUn_KI270579v1 5
chrUn_KI270580v1 43
chrUn_KI270581v1 2
chrUn_KI270582v1 10
chrUn_KI270583v1 51
chrUn_KI270584v1 112
chrUn_KI270587v1 42
chrUn_KI270588v1 104
chrUn_KI270589v1 150
chrUn_KI270590v1 104
chrUn_KI270591v1 170
chrUn_KI270593v1 47
chrUn_KI270741v1 46
chrUn_KI270742v1 1177
chrUn_KI270743v1 738
chrUn_KI270744v1 1968
chrUn_KI270745v1 73
chrUn_KI270746v1 1112
chrUn_KI270747v1 181
chrUn_KI270748v1 59
chrUn_KI270749v1 1066
chrUn_KI270750v1 1476
chrUn_KI270751v1 1432
chrUn_KI270753v1 159
chrUn_KI270754v1 257
chrUn_KI270755v1 126
chrUn_KI270756v1 437
chrUn_KI270757v1 574
chrX 7498388
chrY 85567
chrY_KI270740v1_random 49

Fragment lengths

fragments min max mean median
fragments 357803057 7 1992 217.24 153
global fragment-length histogram

Files

Filename Size md5
T30_b11_Heart_PCW17.fragments.tsv.gz 3.09 GB c6e78ad03a105f1bcbc0c12913e6b9c4
T30_b11_Heart_PCW17.fragments.tsv.gz.tbi 1.3 MB f626827bb3f5f39b9c21a807535a3367
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB a538280f69d427da4a999ff1249d8144
statistics/