Resource

Id summary/liu2026Multiomics/atac_fragments/T314_b17_Spleen_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T314_b17_Spleen_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Spleen
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T314_b17_Spleen_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T314
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL116_A05+C08+H06, CL118_A04+E10+H10, CL127_A05+D08+D10, CL121_A11+C02+E03, CL129_A05+A08+E12 (top 5 of 1766827 values)
count int

count
HISTOGRAM FOR count [1, 41]
n
624,481,954
mean
2.08
sd
1.66

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 624481954
chr1 54626506
chr1_KI270706v1_random 7064
chr1_KI270707v1_random 811
chr1_KI270708v1_random 4594
chr1_KI270709v1_random 6446
chr1_KI270710v1_random 1395
chr1_KI270711v1_random 2337
chr1_KI270712v1_random 2893
chr1_KI270713v1_random 14988
chr1_KI270714v1_random 2563
chr2 49302275
chr2_KI270715v1_random 467
chr2_KI270716v1_random 642
chr3 40056668
chr3_GL000221v1_random 1078
chr4 32202016
chr4_GL000008v2_random 9503
chr5 33951786
chr5_GL000208v1_random 3832
chr6 36455034
chr7 31798415
chr8 28116781
chr9 25604560
chr9_KI270717v1_random 551
chr9_KI270718v1_random 698
chr9_KI270719v1_random 7476
chr9_KI270720v1_random 2673
chr10 28763411
chr11 31744030
chr11_KI270721v1_random 1446
chr12 30846970
chr13 17269241
chr14 20636147
chr14_GL000009v2_random 8343
chr14_GL000194v1_random 6338
chr14_GL000225v1_random 22142
chr14_KI270722v1_random 10541
chr14_KI270723v1_random 2202
chr14_KI270724v1_random 2772
chr14_KI270725v1_random 5686
chr14_KI270726v1_random 3885
chr15 18487063
chr15_KI270727v1_random 1772
chr16 20982959
chr16_KI270728v1_random 18588
chr17 27406704
chr17_GL000205v2_random 56560
chr17_KI270729v1_random 9535
chr17_KI270730v1_random 2310
chr18 13947058
chr19 25575591
chr20 15351116
chr21 7479491
chr22 12103568
chr22_KI270731v1_random 1241
chr22_KI270732v1_random 3871
chr22_KI270733v1_random 184406
chr22_KI270734v1_random 2036
chr22_KI270735v1_random 5019
chr22_KI270736v1_random 6066
chr22_KI270737v1_random 1370
chr22_KI270738v1_random 3760
chr22_KI270739v1_random 105
chrM 6189496
chrUn_GL000195v1 38249
chrUn_GL000213v1 408
chrUn_GL000214v1 2967
chrUn_GL000216v2 11983
chrUn_GL000218v1 7664
chrUn_GL000219v1 57228
chrUn_GL000220v1 14899
chrUn_GL000224v1 15579
chrUn_GL000226v1 13
chrUn_KI270302v1 12
chrUn_KI270303v1 14
chrUn_KI270304v1 5
chrUn_KI270305v1 10
chrUn_KI270310v1 41
chrUn_KI270311v1 42
chrUn_KI270312v1 3
chrUn_KI270315v1 12
chrUn_KI270316v1 4
chrUn_KI270317v1 19
chrUn_KI270320v1 124
chrUn_KI270322v1 83
chrUn_KI270329v1 3
chrUn_KI270330v1 549
chrUn_KI270333v1 246
chrUn_KI270336v1 114
chrUn_KI270337v1 262
chrUn_KI270362v1 41
chrUn_KI270363v1 55
chrUn_KI270364v1 1
chrUn_KI270366v1 23
chrUn_KI270371v1 1
chrUn_KI270374v1 1
chrUn_KI270382v1 2
chrUn_KI270383v1 1
chrUn_KI270385v1 10
chrUn_KI270387v1 1
chrUn_KI270388v1 1
chrUn_KI270389v1 4
chrUn_KI270390v1 3
chrUn_KI270391v1 2
chrUn_KI270392v1 3
chrUn_KI270393v1 4
chrUn_KI270395v1 4
chrUn_KI270411v1 18
chrUn_KI270412v1 17
chrUn_KI270414v1 8
chrUn_KI270417v1 119
chrUn_KI270418v1 47
chrUn_KI270419v1 14
chrUn_KI270420v1 64
chrUn_KI270422v1 32
chrUn_KI270423v1 16
chrUn_KI270424v1 5
chrUn_KI270425v1 5
chrUn_KI270429v1 197
chrUn_KI270435v1 4586
chrUn_KI270438v1 29665
chrUn_KI270442v1 31419
chrUn_KI270448v1 555
chrUn_KI270465v1 68
chrUn_KI270466v1 2764
chrUn_KI270467v1 7841
chrUn_KI270468v1 339
chrUn_KI270507v1 568
chrUn_KI270508v1 349
chrUn_KI270509v1 288
chrUn_KI270510v1 174
chrUn_KI270511v1 501
chrUn_KI270512v1 770
chrUn_KI270515v1 710
chrUn_KI270516v1 139
chrUn_KI270517v1 386
chrUn_KI270518v1 214
chrUn_KI270519v1 6354
chrUn_KI270521v1 276
chrUn_KI270522v1 147
chrUn_KI270528v1 3
chrUn_KI270529v1 8
chrUn_KI270530v1 12
chrUn_KI270538v1 6042
chrUn_KI270539v1 102
chrUn_KI270544v1 21
chrUn_KI270579v1 53
chrUn_KI270580v1 214
chrUn_KI270581v1 11
chrUn_KI270582v1 75
chrUn_KI270583v1 204
chrUn_KI270584v1 589
chrUn_KI270587v1 50
chrUn_KI270588v1 678
chrUn_KI270589v1 742
chrUn_KI270590v1 488
chrUn_KI270591v1 775
chrUn_KI270593v1 226
chrUn_KI270741v1 366
chrUn_KI270742v1 5815
chrUn_KI270743v1 5817
chrUn_KI270744v1 12180
chrUn_KI270745v1 619
chrUn_KI270746v1 5736
chrUn_KI270747v1 438
chrUn_KI270748v1 584
chrUn_KI270749v1 5612
chrUn_KI270750v1 8344
chrUn_KI270751v1 7156
chrUn_KI270753v1 573
chrUn_KI270754v1 1994
chrUn_KI270755v1 762
chrUn_KI270756v1 1270
chrUn_KI270757v1 2675
chrX 13962137
chrY 882768
chrY_KI270740v1_random 579

Fragment lengths

fragments min max mean median
fragments 624481954 7 1992 257.04 185
global fragment-length histogram

Files

Filename Size md5
T314_b17_Spleen_PCW21.fragments.tsv.gz 5.68 GB bc4c03def28f6f5a6f6b2381608e96db
T314_b17_Spleen_PCW21.fragments.tsv.gz.tbi 1.8 MB bced8532739eef57a15c2ec5d8572011
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB f200392b283a27b3ccb7ea1ad397e142
statistics/