Resource

Id summary/liu2026Multiomics/atac_fragments/T318_b16_Adr_PCW21content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T318_b16_Adr_PCW21 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 16
  • modalities: ATAC
  • organ: Adr
  • pcw_age: 21
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T318_b16_Adr_PCW21
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T318
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL131_E01+H09+A09, CL131_E03+E11+A10, CL131_E03+G11+A10, CL131_E05+C09+A09, CL131_E07+B08+A08 (top 5 of 206520 values)
count int

count
HISTOGRAM FOR count [1, 99]
n
31,678,211
mean
6.52
sd
8.3

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 31678211
chr1 2835096
chr1_KI270706v1_random 331
chr1_KI270707v1_random 34
chr1_KI270708v1_random 157
chr1_KI270709v1_random 203
chr1_KI270710v1_random 43
chr1_KI270711v1_random 263
chr1_KI270712v1_random 136
chr1_KI270713v1_random 1154
chr1_KI270714v1_random 181
chr2 2453474
chr2_KI270715v1_random 17
chr2_KI270716v1_random 17
chr3 1994293
chr3_GL000221v1_random 64
chr4 1514679
chr4_GL000008v2_random 354
chr5 1663920
chr5_GL000208v1_random 98
chr6 1723960
chr7 1617376
chr8 1416274
chr9 1349702
chr9_KI270717v1_random 31
chr9_KI270718v1_random 19
chr9_KI270719v1_random 190
chr9_KI270720v1_random 80
chr10 1450386
chr11 1623290
chr11_KI270721v1_random 122
chr12 1529914
chr13 886228
chr14 1004686
chr14_GL000009v2_random 296
chr14_GL000194v1_random 387
chr14_GL000225v1_random 900
chr14_KI270722v1_random 359
chr14_KI270723v1_random 93
chr14_KI270724v1_random 113
chr14_KI270725v1_random 173
chr14_KI270726v1_random 73
chr15 945016
chr15_KI270727v1_random 142
chr16 1118940
chr16_KI270728v1_random 567
chr17 1445288
chr17_GL000205v2_random 2422
chr17_KI270729v1_random 362
chr17_KI270730v1_random 86
chr18 698193
chr19 1419963
chr20 832351
chr21 364241
chr22 655865
chr22_KI270731v1_random 95
chr22_KI270732v1_random 98
chr22_KI270733v1_random 20266
chr22_KI270734v1_random 172
chr22_KI270735v1_random 145
chr22_KI270736v1_random 260
chr22_KI270737v1_random 47
chr22_KI270738v1_random 128
chr22_KI270739v1_random 8
chrM 357861
chrUn_GL000195v1 2593
chrUn_GL000213v1 22
chrUn_GL000214v1 120
chrUn_GL000216v2 555
chrUn_GL000218v1 348
chrUn_GL000219v1 2955
chrUn_GL000220v1 1137
chrUn_GL000224v1 638
chrUn_KI270310v1 4
chrUn_KI270311v1 2
chrUn_KI270315v1 1
chrUn_KI270317v1 1
chrUn_KI270320v1 4
chrUn_KI270322v1 3
chrUn_KI270330v1 37
chrUn_KI270333v1 5
chrUn_KI270336v1 3
chrUn_KI270337v1 7
chrUn_KI270362v1 2
chrUn_KI270363v1 3
chrUn_KI270383v1 1
chrUn_KI270385v1 1
chrUn_KI270417v1 4
chrUn_KI270420v1 1
chrUn_KI270422v1 1
chrUn_KI270429v1 8
chrUn_KI270435v1 149
chrUn_KI270438v1 1383
chrUn_KI270442v1 1024
chrUn_KI270448v1 13
chrUn_KI270466v1 75
chrUn_KI270467v1 223
chrUn_KI270468v1 9
chrUn_KI270507v1 19
chrUn_KI270508v1 11
chrUn_KI270509v1 8
chrUn_KI270510v1 8
chrUn_KI270511v1 13
chrUn_KI270512v1 25
chrUn_KI270515v1 17
chrUn_KI270516v1 5
chrUn_KI270517v1 8
chrUn_KI270518v1 5
chrUn_KI270519v1 170
chrUn_KI270521v1 10
chrUn_KI270522v1 2
chrUn_KI270538v1 172
chrUn_KI270579v1 2
chrUn_KI270580v1 8
chrUn_KI270582v1 2
chrUn_KI270583v1 4
chrUn_KI270584v1 22
chrUn_KI270587v1 4
chrUn_KI270588v1 23
chrUn_KI270589v1 33
chrUn_KI270590v1 8
chrUn_KI270591v1 35
chrUn_KI270593v1 8
chrUn_KI270741v1 25
chrUn_KI270742v1 206
chrUn_KI270743v1 187
chrUn_KI270744v1 436
chrUn_KI270745v1 21
chrUn_KI270746v1 138
chrUn_KI270747v1 23
chrUn_KI270748v1 72
chrUn_KI270749v1 157
chrUn_KI270750v1 223
chrUn_KI270751v1 229
chrUn_KI270753v1 15
chrUn_KI270754v1 74
chrUn_KI270755v1 134
chrUn_KI270756v1 48
chrUn_KI270757v1 71
chrX 694477
chrY 38018
chrY_KI270740v1_random 21

Fragment lengths

fragments min max mean median
fragments 31678211 7 1992 265.95 195
global fragment-length histogram

Files

Filename Size md5
T318_b16_Adr_PCW21.fragments.tsv.gz 296.66 MB 51b04b25807c84d5f57e41ba4e020d4a
T318_b16_Adr_PCW21.fragments.tsv.gz.tbi 582.78 KB 04c77c931d39d54c00421d3b7c3ae1e0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 98b77b9965fd2e6af906291c52bc9666
statistics/