Resource

Id summary/liu2026Multiomics/atac_fragments/T35_b10_Stomach_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T35_b10_Stomach_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 10
  • modalities: ATAC
  • organ: Stomach
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T35_b10_Stomach_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T35
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL70_B11+B12+H02, CL66_B07+B06+G02, CL71_B03+G04+F12, CL68_B08+E07+H06, CL67_B09+C07+B10 (top 5 of 884730 values)
count int

count
HISTOGRAM FOR count [1, 16]
n
330,481,215
mean
1.41
sd
0.769

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 330481215
chr1 28709839
chr1_KI270706v1_random 3900
chr1_KI270707v1_random 663
chr1_KI270708v1_random 1652
chr1_KI270709v1_random 4464
chr1_KI270710v1_random 662
chr1_KI270711v1_random 1411
chr1_KI270712v1_random 1752
chr1_KI270713v1_random 14435
chr1_KI270714v1_random 2660
chr2 26082956
chr2_KI270715v1_random 219
chr2_KI270716v1_random 589
chr3 21629228
chr3_GL000221v1_random 685
chr4 18476229
chr4_GL000008v2_random 6344
chr5 18373529
chr5_GL000208v1_random 2877
chr6 18860105
chr7 17241155
chr8 14937944
chr9 13670139
chr9_KI270717v1_random 198
chr9_KI270718v1_random 270
chr9_KI270719v1_random 4053
chr9_KI270720v1_random 1617
chr10 14603566
chr11 16909085
chr11_KI270721v1_random 1247
chr12 15793554
chr13 9294903
chr14 10454911
chr14_GL000009v2_random 5326
chr14_GL000194v1_random 4033
chr14_GL000225v1_random 16795
chr14_KI270722v1_random 5962
chr14_KI270723v1_random 1318
chr14_KI270724v1_random 1229
chr14_KI270725v1_random 3315
chr14_KI270726v1_random 981
chr15 9237861
chr15_KI270727v1_random 589
chr16 10669017
chr16_KI270728v1_random 2053
chr17 13096578
chr17_GL000205v2_random 30105
chr17_KI270729v1_random 9817
chr17_KI270730v1_random 2073
chr18 7389308
chr19 12142187
chr20 7668469
chr21 3837163
chr22 5745573
chr22_KI270731v1_random 368
chr22_KI270732v1_random 2106
chr22_KI270733v1_random 35291
chr22_KI270734v1_random 714
chr22_KI270735v1_random 3351
chr22_KI270736v1_random 4945
chr22_KI270737v1_random 819
chr22_KI270738v1_random 2504
chr22_KI270739v1_random 30
chrM 4659939
chrUn_GL000195v1 19625
chrUn_GL000213v1 206
chrUn_GL000214v1 1196
chrUn_GL000216v2 7455
chrUn_GL000218v1 3451
chrUn_GL000219v1 12006
chrUn_GL000220v1 7871
chrUn_GL000224v1 7622
chrUn_GL000226v1 7
chrUn_KI270302v1 39
chrUn_KI270303v1 41
chrUn_KI270304v1 55
chrUn_KI270305v1 9
chrUn_KI270310v1 113
chrUn_KI270311v1 44
chrUn_KI270315v1 6
chrUn_KI270316v1 3
chrUn_KI270317v1 6
chrUn_KI270320v1 80
chrUn_KI270322v1 93
chrUn_KI270329v1 3
chrUn_KI270330v1 242
chrUn_KI270333v1 195
chrUn_KI270336v1 141
chrUn_KI270337v1 336
chrUn_KI270362v1 25
chrUn_KI270363v1 26
chrUn_KI270364v1 2
chrUn_KI270366v1 25
chrUn_KI270371v1 2
chrUn_KI270378v1 5
chrUn_KI270382v1 9
chrUn_KI270383v1 3
chrUn_KI270384v1 6
chrUn_KI270385v1 4
chrUn_KI270388v1 2
chrUn_KI270389v1 1
chrUn_KI270390v1 1
chrUn_KI270391v1 1
chrUn_KI270392v1 2
chrUn_KI270393v1 15
chrUn_KI270395v1 1
chrUn_KI270411v1 30
chrUn_KI270412v1 12
chrUn_KI270414v1 21
chrUn_KI270417v1 85
chrUn_KI270418v1 43
chrUn_KI270419v1 21
chrUn_KI270420v1 76
chrUn_KI270422v1 25
chrUn_KI270423v1 10
chrUn_KI270424v1 5
chrUn_KI270425v1 3
chrUn_KI270429v1 260
chrUn_KI270435v1 3248
chrUn_KI270438v1 49452
chrUn_KI270442v1 20580
chrUn_KI270448v1 469
chrUn_KI270465v1 40
chrUn_KI270466v1 3094
chrUn_KI270467v1 8702
chrUn_KI270468v1 271
chrUn_KI270507v1 396
chrUn_KI270508v1 183
chrUn_KI270509v1 204
chrUn_KI270510v1 122
chrUn_KI270511v1 407
chrUn_KI270512v1 587
chrUn_KI270515v1 512
chrUn_KI270516v1 106
chrUn_KI270517v1 303
chrUn_KI270518v1 159
chrUn_KI270519v1 4851
chrUn_KI270521v1 177
chrUn_KI270522v1 101
chrUn_KI270528v1 2
chrUn_KI270529v1 16
chrUn_KI270530v1 7
chrUn_KI270538v1 3871
chrUn_KI270539v1 20
chrUn_KI270544v1 19
chrUn_KI270579v1 35
chrUn_KI270580v1 129
chrUn_KI270581v1 6
chrUn_KI270582v1 52
chrUn_KI270583v1 148
chrUn_KI270584v1 433
chrUn_KI270587v1 46
chrUn_KI270588v1 494
chrUn_KI270589v1 404
chrUn_KI270590v1 382
chrUn_KI270591v1 647
chrUn_KI270593v1 171
chrUn_KI270741v1 135
chrUn_KI270742v1 3261
chrUn_KI270743v1 2346
chrUn_KI270744v1 6263
chrUn_KI270745v1 206
chrUn_KI270746v1 3881
chrUn_KI270747v1 399
chrUn_KI270748v1 139
chrUn_KI270749v1 3554
chrUn_KI270750v1 5404
chrUn_KI270751v1 5232
chrUn_KI270753v1 483
chrUn_KI270754v1 529
chrUn_KI270755v1 268
chrUn_KI270756v1 919
chrUn_KI270757v1 1946
chrX 10555115
chrY 62021
chrY_KI270740v1_random 42

Fragment lengths

fragments min max mean median
fragments 330481215 7 1992 276.95 208
global fragment-length histogram

Files

Filename Size md5
T35_b10_Stomach_PCW17.fragments.tsv.gz 3.16 GB b66ec3345b3ab7a939b70f2c565493a8
T35_b10_Stomach_PCW17.fragments.tsv.gz.tbi 1.36 MB 3259479519d21811e57aefc58893f7a7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 94ad67ec8df3084650aef74370caa9b6
statistics/