Resource

Id summary/liu2026Multiomics/atac_fragments/T361_b11_Heart_PCW20content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T361_b11_Heart_PCW20 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 20
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T361_b11_Heart_PCW20
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T361
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell

HISTOGRAM FOR cell CL74_F10+A05+E09, CL76_F10+D08+B08, CL79_F12+G07+D03, CL80_F04+E06+C09, CL74_F04+H01+C04 (top 5 of 884736 values)
count int

count

HISTOGRAM FOR count [1, 29]
n
202,701,137
mean
1.21
sd
0.525

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 202701137
chr1 18626536
chr1_KI270706v1_random 906
chr1_KI270707v1_random 130
chr1_KI270708v1_random 302
chr1_KI270709v1_random 905
chr1_KI270710v1_random 126
chr1_KI270711v1_random 393
chr1_KI270712v1_random 653
chr1_KI270713v1_random 5201
chr1_KI270714v1_random 622
chr2 15558560
chr2_KI270715v1_random 22
chr2_KI270716v1_random 128
chr3 13018018
chr3_GL000221v1_random 184
chr4 9852387
chr4_GL000008v2_random 1437
chr5 10998873
chr5_GL000208v1_random 578
chr6 11300223
chr7 10023986
chr8 8722367
chr9 8224948
chr9_KI270717v1_random 152
chr9_KI270718v1_random 104
chr9_KI270719v1_random 726
chr9_KI270720v1_random 357
chr10 9619304
chr11 10370937
chr11_KI270721v1_random 626
chr12 9633102
chr13 5167292
chr14 6097080
chr14_GL000009v2_random 705
chr14_GL000194v1_random 916
chr14_GL000225v1_random 4625
chr14_KI270722v1_random 641
chr14_KI270723v1_random 252
chr14_KI270724v1_random 215
chr14_KI270725v1_random 582
chr14_KI270726v1_random 56
chr15 6434619
chr15_KI270727v1_random 293
chr16 6534807
chr16_KI270728v1_random 900
chr17 9034019
chr17_GL000205v2_random 12772
chr17_KI270729v1_random 2418
chr17_KI270730v1_random 531
chr18 4335936
chr19 8680083
chr20 4789853
chr21 2049278
chr22 3966426
chr22_KI270731v1_random 302
chr22_KI270732v1_random 432
chr22_KI270733v1_random 42338
chr22_KI270734v1_random 784
chr22_KI270735v1_random 622
chr22_KI270736v1_random 1643
chr22_KI270737v1_random 216
chr22_KI270738v1_random 582
chr22_KI270739v1_random 20
chrM 5228412
chrUn_GL000195v1 17019
chrUn_GL000213v1 57
chrUn_GL000214v1 390
chrUn_GL000216v2 1813
chrUn_GL000218v1 1355
chrUn_GL000219v1 20068
chrUn_GL000220v1 3618
chrUn_GL000224v1 1846
chrUn_GL000226v1 8
chrUn_KI270302v1 6
chrUn_KI270303v1 3
chrUn_KI270304v1 3
chrUn_KI270305v1 5
chrUn_KI270310v1 7
chrUn_KI270311v1 17
chrUn_KI270315v1 2
chrUn_KI270317v1 1
chrUn_KI270320v1 22
chrUn_KI270322v1 19
chrUn_KI270330v1 59
chrUn_KI270333v1 57
chrUn_KI270336v1 34
chrUn_KI270337v1 82
chrUn_KI270362v1 4
chrUn_KI270363v1 3
chrUn_KI270366v1 1
chrUn_KI270378v1 2
chrUn_KI270382v1 3
chrUn_KI270384v1 1
chrUn_KI270386v1 1
chrUn_KI270388v1 1
chrUn_KI270389v1 2
chrUn_KI270390v1 1
chrUn_KI270396v1 1
chrUn_KI270411v1 5
chrUn_KI270412v1 7
chrUn_KI270414v1 4
chrUn_KI270417v1 15
chrUn_KI270418v1 6
chrUn_KI270420v1 11
chrUn_KI270422v1 7
chrUn_KI270423v1 1
chrUn_KI270425v1 1
chrUn_KI270429v1 39
chrUn_KI270435v1 628
chrUn_KI270438v1 7231
chrUn_KI270442v1 4875
chrUn_KI270448v1 89
chrUn_KI270465v1 31
chrUn_KI270466v1 519
chrUn_KI270467v1 1813
chrUn_KI270468v1 61
chrUn_KI270507v1 73
chrUn_KI270508v1 43
chrUn_KI270509v1 49
chrUn_KI270510v1 28
chrUn_KI270511v1 76
chrUn_KI270512v1 142
chrUn_KI270515v1 106
chrUn_KI270516v1 29
chrUn_KI270517v1 61
chrUn_KI270518v1 37
chrUn_KI270519v1 1124
chrUn_KI270521v1 37
chrUn_KI270522v1 18
chrUn_KI270528v1 3
chrUn_KI270529v1 2
chrUn_KI270530v1 2
chrUn_KI270538v1 755
chrUn_KI270539v1 2
chrUn_KI270544v1 4
chrUn_KI270579v1 3
chrUn_KI270580v1 32
chrUn_KI270581v1 1
chrUn_KI270582v1 11
chrUn_KI270583v1 34
chrUn_KI270584v1 86
chrUn_KI270587v1 63
chrUn_KI270588v1 81
chrUn_KI270589v1 107
chrUn_KI270590v1 74
chrUn_KI270591v1 119
chrUn_KI270593v1 27
chrUn_KI270741v1 45
chrUn_KI270742v1 693
chrUn_KI270743v1 500
chrUn_KI270744v1 1079
chrUn_KI270745v1 51
chrUn_KI270746v1 712
chrUn_KI270747v1 115
chrUn_KI270748v1 57
chrUn_KI270749v1 632
chrUn_KI270750v1 1033
chrUn_KI270751v1 1112
chrUn_KI270753v1 86
chrUn_KI270754v1 168
chrUn_KI270755v1 74
chrUn_KI270756v1 321
chrUn_KI270757v1 416
chrX 4205401
chrY 71076
chrY_KI270740v1_random 40

Fragment lengths

fragments min max mean median
fragments 202701137 7 1992 217.33 152
global fragment-length histogram

Files

Filename Size md5
T361_b11_Heart_PCW20.fragments.tsv.gz 1.81 GB a2e4e7a9dfe9d24b130eec04952cc852
T361_b11_Heart_PCW20.fragments.tsv.gz.tbi 996.56 KB ad426e557dfbe352b76f318e6fe11626
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 1055433f0e6fc2c99b61deb86bcf1f2c
statistics/