Resource

Id summary/liu2026Multiomics/atac_fragments/T377_b9_Muscle_PCW15content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T377_b9_Muscle_PCW15 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 9
  • modalities: ATAC
  • organ: Muscle
  • pcw_age: 15
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T377_b9_Muscle_PCW15
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T377
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL63_B09+C06+D03, CL57_B07+G09+E08, CL63_B06+A05+C09, CL57_B03+H07+A06, CL61_B07+B03+C11 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 77]
n
447,717,657
mean
1.24
sd
0.559

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 447717657
chr1 37619552
chr1_KI270706v1_random 8392
chr1_KI270707v1_random 1434
chr1_KI270708v1_random 3299
chr1_KI270709v1_random 9514
chr1_KI270710v1_random 1236
chr1_KI270711v1_random 1831
chr1_KI270712v1_random 2898
chr1_KI270713v1_random 7820
chr1_KI270714v1_random 1205
chr2 38135470
chr2_KI270715v1_random 284
chr2_KI270716v1_random 1335
chr3 32222004
chr3_GL000221v1_random 1665
chr4 29091697
chr4_GL000008v2_random 13824
chr5 27758581
chr5_GL000208v1_random 5927
chr6 27672182
chr7 25211586
chr8 22577281
chr9 17766822
chr9_KI270717v1_random 203
chr9_KI270718v1_random 461
chr9_KI270719v1_random 6218
chr9_KI270720v1_random 3620
chr10 20385620
chr11 21854373
chr11_KI270721v1_random 592
chr12 21720802
chr13 14037601
chr14 13892900
chr14_GL000009v2_random 8544
chr14_GL000194v1_random 7578
chr14_GL000225v1_random 36163
chr14_KI270722v1_random 6699
chr14_KI270723v1_random 2847
chr14_KI270724v1_random 2403
chr14_KI270725v1_random 4954
chr14_KI270726v1_random 123
chr15 11391373
chr15_KI270727v1_random 1115
chr16 12741445
chr16_KI270728v1_random 4601
chr17 13308963
chr17_GL000205v2_random 34297
chr17_KI270729v1_random 27688
chr17_KI270730v1_random 5250
chr18 10827301
chr19 11419570
chr20 9098935
chr21 4921846
chr22 5644624
chr22_KI270731v1_random 447
chr22_KI270732v1_random 5010
chr22_KI270733v1_random 39641
chr22_KI270734v1_random 1039
chr22_KI270735v1_random 6677
chr22_KI270736v1_random 21998
chr22_KI270737v1_random 2206
chr22_KI270738v1_random 6906
chr22_KI270739v1_random 140
chrM 4706086
chrUn_GL000195v1 15685
chrUn_GL000213v1 718
chrUn_GL000214v1 3742
chrUn_GL000216v2 18305
chrUn_GL000218v1 10825
chrUn_GL000219v1 21292
chrUn_GL000220v1 5816
chrUn_GL000224v1 15644
chrUn_GL000226v1 47
chrUn_KI270302v1 27
chrUn_KI270303v1 21
chrUn_KI270304v1 8
chrUn_KI270305v1 44
chrUn_KI270310v1 50
chrUn_KI270311v1 100
chrUn_KI270312v1 4
chrUn_KI270315v1 8
chrUn_KI270316v1 6
chrUn_KI270317v1 12
chrUn_KI270320v1 282
chrUn_KI270322v1 171
chrUn_KI270329v1 2
chrUn_KI270330v1 448
chrUn_KI270333v1 525
chrUn_KI270336v1 353
chrUn_KI270337v1 707
chrUn_KI270362v1 78
chrUn_KI270363v1 49
chrUn_KI270364v1 5
chrUn_KI270366v1 55
chrUn_KI270371v1 1
chrUn_KI270374v1 1
chrUn_KI270375v1 1
chrUn_KI270378v1 3
chrUn_KI270381v1 1
chrUn_KI270382v1 38
chrUn_KI270383v1 4
chrUn_KI270384v1 5
chrUn_KI270385v1 2
chrUn_KI270386v1 3
chrUn_KI270388v1 3
chrUn_KI270389v1 13
chrUn_KI270390v1 17
chrUn_KI270391v1 3
chrUn_KI270392v1 16
chrUn_KI270393v1 11
chrUn_KI270394v1 1
chrUn_KI270395v1 22
chrUn_KI270396v1 1
chrUn_KI270411v1 23
chrUn_KI270412v1 23
chrUn_KI270414v1 9
chrUn_KI270417v1 192
chrUn_KI270418v1 64
chrUn_KI270419v1 16
chrUn_KI270420v1 117
chrUn_KI270422v1 142
chrUn_KI270423v1 29
chrUn_KI270424v1 9
chrUn_KI270425v1 7
chrUn_KI270429v1 415
chrUn_KI270435v1 6987
chrUn_KI270438v1 73701
chrUn_KI270442v1 50155
chrUn_KI270448v1 915
chrUn_KI270465v1 326
chrUn_KI270466v1 4334
chrUn_KI270467v1 13999
chrUn_KI270468v1 576
chrUn_KI270507v1 1001
chrUn_KI270508v1 409
chrUn_KI270509v1 455
chrUn_KI270510v1 315
chrUn_KI270511v1 878
chrUn_KI270512v1 1541
chrUn_KI270515v1 1227
chrUn_KI270516v1 240
chrUn_KI270517v1 658
chrUn_KI270518v1 341
chrUn_KI270519v1 12749
chrUn_KI270521v1 421
chrUn_KI270522v1 223
chrUn_KI270528v1 4
chrUn_KI270529v1 19
chrUn_KI270530v1 17
chrUn_KI270538v1 8214
chrUn_KI270539v1 10
chrUn_KI270544v1 25
chrUn_KI270579v1 45
chrUn_KI270580v1 322
chrUn_KI270581v1 11
chrUn_KI270582v1 77
chrUn_KI270583v1 311
chrUn_KI270584v1 949
chrUn_KI270587v1 96
chrUn_KI270588v1 862
chrUn_KI270589v1 1070
chrUn_KI270590v1 755
chrUn_KI270591v1 1008
chrUn_KI270593v1 307
chrUn_KI270741v1 305
chrUn_KI270742v1 5469
chrUn_KI270743v1 5641
chrUn_KI270744v1 9429
chrUn_KI270745v1 282
chrUn_KI270746v1 7602
chrUn_KI270747v1 1087
chrUn_KI270748v1 263
chrUn_KI270749v1 6877
chrUn_KI270750v1 9651
chrUn_KI270751v1 11156
chrUn_KI270753v1 823
chrUn_KI270754v1 1790
chrUn_KI270755v1 320
chrUn_KI270756v1 3927
chrUn_KI270757v1 4215
chrX 12090408
chrY 971351
chrY_KI270740v1_random 589

Fragment lengths

fragments min max mean median
fragments 447717657 7 1992 280.16 229
global fragment-length histogram

Files

Filename Size md5
T377_b9_Muscle_PCW15.fragments.tsv.gz 4.19 GB fdcb0a4043ae46c13af8de4e5dc92cb3
T377_b9_Muscle_PCW15.fragments.tsv.gz.tbi 1.38 MB 9ed2df9343d9cacf4983955c6669a37e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 89d407fb5415e25f3a695193a64ed2f4
statistics/