Resource

Id summary/liu2026Multiomics/atac_fragments/T382_b4_Brain_PCW15content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T382_b4_Brain_PCW15 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 4
  • modalities: ATAC
  • organ: Brain
  • pcw_age: 15
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T382_b4_Brain_PCW15
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T382
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL25_C10+G03+C11, CL30_C01+C02+A04, CL28_C04+H07+A08, CL27_C03+B03+B07, CL25_C04+C08+F05 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 36]
n
254,042,275
mean
1.91
sd
1.7

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 254042275
chr1 22780884
chr1_KI270706v1_random 2261
chr1_KI270707v1_random 326
chr1_KI270708v1_random 754
chr1_KI270709v1_random 1839
chr1_KI270710v1_random 245
chr1_KI270711v1_random 917
chr1_KI270712v1_random 974
chr1_KI270713v1_random 10527
chr1_KI270714v1_random 1249
chr2 19763936
chr2_KI270715v1_random 51
chr2_KI270716v1_random 206
chr3 16131171
chr3_GL000221v1_random 403
chr4 12337174
chr4_GL000008v2_random 3980
chr5 13350523
chr5_GL000208v1_random 1081
chr6 13955108
chr7 13008149
chr8 10965629
chr9 10732802
chr9_KI270717v1_random 135
chr9_KI270718v1_random 246
chr9_KI270719v1_random 1508
chr9_KI270720v1_random 768
chr10 11602805
chr11 13307296
chr11_KI270721v1_random 949
chr12 11999663
chr13 6586798
chr14 8065558
chr14_GL000009v2_random 1953
chr14_GL000194v1_random 2324
chr14_GL000225v1_random 10391
chr14_KI270722v1_random 1390
chr14_KI270723v1_random 821
chr14_KI270724v1_random 641
chr14_KI270725v1_random 1062
chr14_KI270726v1_random 37
chr15 7513258
chr15_KI270727v1_random 265
chr16 9175452
chr16_KI270728v1_random 1227
chr17 11767626
chr17_GL000205v2_random 16741
chr17_KI270729v1_random 4103
chr17_KI270730v1_random 1187
chr18 5445695
chr19 11677163
chr20 6433608
chr21 2870132
chr22 5200291
chr22_KI270731v1_random 511
chr22_KI270732v1_random 1081
chr22_KI270733v1_random 34477
chr22_KI270734v1_random 900
chr22_KI270735v1_random 1326
chr22_KI270736v1_random 5915
chr22_KI270737v1_random 419
chr22_KI270738v1_random 1056
chr22_KI270739v1_random 13
chrM 3440713
chrUn_GL000195v1 15197
chrUn_GL000213v1 171
chrUn_GL000214v1 1124
chrUn_GL000216v2 4199
chrUn_GL000218v1 2666
chrUn_GL000219v1 9308
chrUn_GL000220v1 3802
chrUn_GL000224v1 4284
chrUn_GL000226v1 9
chrUn_KI270302v1 2
chrUn_KI270303v1 4
chrUn_KI270305v1 4
chrUn_KI270310v1 12
chrUn_KI270311v1 30
chrUn_KI270315v1 6
chrUn_KI270317v1 1
chrUn_KI270320v1 44
chrUn_KI270322v1 37
chrUn_KI270330v1 143
chrUn_KI270333v1 110
chrUn_KI270336v1 77
chrUn_KI270337v1 162
chrUn_KI270362v1 19
chrUn_KI270363v1 16
chrUn_KI270366v1 9
chrUn_KI270381v1 1
chrUn_KI270382v1 8
chrUn_KI270385v1 1
chrUn_KI270389v1 1
chrUn_KI270390v1 4
chrUn_KI270392v1 1
chrUn_KI270395v1 4
chrUn_KI270411v1 4
chrUn_KI270412v1 4
chrUn_KI270414v1 2
chrUn_KI270417v1 21
chrUn_KI270418v1 8
chrUn_KI270419v1 4
chrUn_KI270420v1 26
chrUn_KI270422v1 23
chrUn_KI270423v1 7
chrUn_KI270424v1 1
chrUn_KI270425v1 2
chrUn_KI270429v1 68
chrUn_KI270435v1 1129
chrUn_KI270438v1 11276
chrUn_KI270442v1 9851
chrUn_KI270448v1 141
chrUn_KI270465v1 39
chrUn_KI270466v1 881
chrUn_KI270467v1 2726
chrUn_KI270468v1 91
chrUn_KI270507v1 148
chrUn_KI270508v1 79
chrUn_KI270509v1 65
chrUn_KI270510v1 50
chrUn_KI270511v1 120
chrUn_KI270512v1 243
chrUn_KI270515v1 199
chrUn_KI270516v1 41
chrUn_KI270517v1 88
chrUn_KI270518v1 48
chrUn_KI270519v1 1858
chrUn_KI270521v1 69
chrUn_KI270522v1 38
chrUn_KI270528v1 3
chrUn_KI270529v1 4
chrUn_KI270530v1 7
chrUn_KI270538v1 1409
chrUn_KI270539v1 4
chrUn_KI270544v1 8
chrUn_KI270579v1 7
chrUn_KI270580v1 59
chrUn_KI270581v1 7
chrUn_KI270582v1 15
chrUn_KI270583v1 67
chrUn_KI270584v1 109
chrUn_KI270587v1 10
chrUn_KI270588v1 112
chrUn_KI270589v1 218
chrUn_KI270590v1 115
chrUn_KI270591v1 176
chrUn_KI270593v1 52
chrUn_KI270741v1 108
chrUn_KI270742v1 1492
chrUn_KI270743v1 1330
chrUn_KI270744v1 2849
chrUn_KI270745v1 125
chrUn_KI270746v1 1444
chrUn_KI270747v1 250
chrUn_KI270748v1 120
chrUn_KI270749v1 1529
chrUn_KI270750v1 1842
chrUn_KI270751v1 2182
chrUn_KI270753v1 213
chrUn_KI270754v1 566
chrUn_KI270755v1 238
chrUn_KI270756v1 638
chrUn_KI270757v1 638
chrX 5422523
chrY 303153
chrY_KI270740v1_random 154

Fragment lengths

fragments min max mean median
fragments 254042275 7 1992 255.45 186
global fragment-length histogram

Files

Filename Size md5
T382_b4_Brain_PCW15.fragments.tsv.gz 2.22 GB 467f22637f20f8d004865e1662b53742
T382_b4_Brain_PCW15.fragments.tsv.gz.tbi 1.12 MB ddc1ad6a430917e61500aa0a83e616ae
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 247221567d0e2e540de1d4450af04357
statistics/