Resource

Id summary/liu2026Multiomics/atac_fragments/T390_b16_Adr_PCW13content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T390_b16_Adr_PCW13 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 16
  • modalities: ATAC
  • organ: Adr
  • pcw_age: 13
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T390_b16_Adr_PCW13
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T390
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL131_A11+C01+F01, CL131_A08+A04+G04, CL131_A03+A10+H11, CL131_A01+H09+A08, CL131_A11+A02+A02 (top 5 of 181773 values)
count int

count
HISTOGRAM FOR count [1, 97]
n
5,819,694
mean
5.6
sd
7.85

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 5819694
chr1 506905
chr1_KI270706v1_random 62
chr1_KI270707v1_random 8
chr1_KI270708v1_random 27
chr1_KI270709v1_random 47
chr1_KI270710v1_random 6
chr1_KI270711v1_random 25
chr1_KI270712v1_random 18
chr1_KI270713v1_random 229
chr1_KI270714v1_random 33
chr2 445987
chr2_KI270715v1_random 2
chr2_KI270716v1_random 2
chr3 360763
chr3_GL000221v1_random 14
chr4 286996
chr4_GL000008v2_random 110
chr5 303590
chr5_GL000208v1_random 31
chr6 311854
chr7 290496
chr8 252191
chr9 242281
chr9_KI270717v1_random 15
chr9_KI270718v1_random 8
chr9_KI270719v1_random 57
chr9_KI270720v1_random 35
chr10 266284
chr11 301490
chr11_KI270721v1_random 34
chr12 276155
chr13 163035
chr14 187349
chr14_GL000009v2_random 71
chr14_GL000194v1_random 79
chr14_GL000225v1_random 227
chr14_KI270722v1_random 69
chr14_KI270723v1_random 24
chr14_KI270724v1_random 20
chr14_KI270725v1_random 22
chr14_KI270726v1_random 3
chr15 167855
chr15_KI270727v1_random 16
chr16 198924
chr16_KI270728v1_random 70
chr17 253480
chr17_GL000205v2_random 507
chr17_KI270729v1_random 107
chr17_KI270730v1_random 36
chr18 175727
chr19 243572
chr20 150908
chr21 67048
chr22 117575
chr22_KI270731v1_random 6
chr22_KI270732v1_random 38
chr22_KI270733v1_random 2258
chr22_KI270734v1_random 24
chr22_KI270735v1_random 53
chr22_KI270736v1_random 163
chr22_KI270737v1_random 10
chr22_KI270738v1_random 26
chrM 72141
chrUn_GL000195v1 383
chrUn_GL000213v1 3
chrUn_GL000214v1 42
chrUn_GL000216v2 87
chrUn_GL000218v1 80
chrUn_GL000219v1 358
chrUn_GL000220v1 211
chrUn_GL000224v1 186
chrUn_GL000226v1 2
chrUn_KI270305v1 1
chrUn_KI270311v1 1
chrUn_KI270317v1 1
chrUn_KI270322v1 2
chrUn_KI270330v1 9
chrUn_KI270333v1 5
chrUn_KI270336v1 2
chrUn_KI270337v1 5
chrUn_KI270363v1 1
chrUn_KI270392v1 1
chrUn_KI270412v1 1
chrUn_KI270417v1 1
chrUn_KI270418v1 1
chrUn_KI270424v1 1
chrUn_KI270429v1 1
chrUn_KI270435v1 34
chrUn_KI270438v1 428
chrUn_KI270442v1 298
chrUn_KI270448v1 8
chrUn_KI270466v1 33
chrUn_KI270467v1 79
chrUn_KI270468v1 6
chrUn_KI270507v1 7
chrUn_KI270508v1 1
chrUn_KI270509v1 4
chrUn_KI270510v1 8
chrUn_KI270511v1 9
chrUn_KI270512v1 8
chrUn_KI270515v1 14
chrUn_KI270516v1 1
chrUn_KI270517v1 3
chrUn_KI270518v1 1
chrUn_KI270519v1 62
chrUn_KI270521v1 4
chrUn_KI270538v1 48
chrUn_KI270580v1 2
chrUn_KI270583v1 2
chrUn_KI270584v1 1
chrUn_KI270587v1 6
chrUn_KI270588v1 6
chrUn_KI270589v1 9
chrUn_KI270590v1 2
chrUn_KI270591v1 9
chrUn_KI270593v1 1
chrUn_KI270741v1 3
chrUn_KI270742v1 49
chrUn_KI270743v1 84
chrUn_KI270744v1 100
chrUn_KI270745v1 4
chrUn_KI270746v1 42
chrUn_KI270747v1 11
chrUn_KI270748v1 2
chrUn_KI270749v1 45
chrUn_KI270750v1 55
chrUn_KI270751v1 74
chrUn_KI270753v1 7
chrUn_KI270754v1 16
chrUn_KI270755v1 3
chrUn_KI270756v1 15
chrUn_KI270757v1 21
chrX 167934
chrY 1551
chrY_KI270740v1_random 1

Fragment lengths

fragments min max mean median
fragments 5819694 7 1992 263.58 195
global fragment-length histogram

Files

Filename Size md5
T390_b16_Adr_PCW13.fragments.tsv.gz 59.98 MB 2f15fbee44bed5ab143547e780348f31
T390_b16_Adr_PCW13.fragments.tsv.gz.tbi 649.03 KB e81e91e563f0eb5d4e90de70ece05e88
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 12806f76f27ce70abf327778e9cdf744
statistics/