Resource

Id summary/liu2026Multiomics/atac_fragments/T398_b15_Liver_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T398_b15_Liver_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 15
  • modalities: ATAC
  • organ: Liver
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T398_b15_Liver_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T398
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL109_A11+B10+C12, CL107_A11+F12+G08, CL109_A04+H09+E11, CL110_A04+E06+B03, CL109_A07+A08+D10 (top 5 of 1105777 values)
count int

count
HISTOGRAM FOR count [1, 61]
n
379,059,567
mean
2.63
sd
2.75

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 379059567
chr1 36189214
chr1_KI270706v1_random 3486
chr1_KI270707v1_random 348
chr1_KI270708v1_random 1708
chr1_KI270709v1_random 2553
chr1_KI270710v1_random 541
chr1_KI270711v1_random 2051
chr1_KI270712v1_random 1411
chr1_KI270713v1_random 21007
chr1_KI270714v1_random 2368
chr2 28224422
chr2_KI270715v1_random 102
chr2_KI270716v1_random 195
chr3 24039369
chr3_GL000221v1_random 738
chr4 16936188
chr4_GL000008v2_random 3665
chr5 19103264
chr5_GL000208v1_random 1299
chr6 21342815
chr7 18904644
chr8 15584164
chr9 15846095
chr9_KI270717v1_random 224
chr9_KI270718v1_random 227
chr9_KI270719v1_random 2404
chr9_KI270720v1_random 999
chr10 16271897
chr11 19669583
chr11_KI270721v1_random 1634
chr12 18198080
chr13 8712879
chr14 12350917
chr14_GL000009v2_random 2783
chr14_GL000194v1_random 3523
chr14_GL000225v1_random 9635
chr14_KI270722v1_random 2634
chr14_KI270723v1_random 900
chr14_KI270724v1_random 1035
chr14_KI270725v1_random 1905
chr14_KI270726v1_random 90
chr15 11150195
chr15_KI270727v1_random 621
chr16 14095174
chr16_KI270728v1_random 3452
chr17 17751946
chr17_GL000205v2_random 44261
chr17_KI270729v1_random 4184
chr17_KI270730v1_random 919
chr18 7227648
chr19 19338510
chr20 9484172
chr21 4037021
chr22 8255597
chr22_KI270731v1_random 1657
chr22_KI270732v1_random 1430
chr22_KI270733v1_random 63404
chr22_KI270734v1_random 1375
chr22_KI270735v1_random 1844
chr22_KI270736v1_random 3740
chr22_KI270737v1_random 601
chr22_KI270738v1_random 1333
chr22_KI270739v1_random 36
chrM 6201637
chrUn_GL000195v1 41900
chrUn_GL000213v1 143
chrUn_GL000214v1 906
chrUn_GL000216v2 5580
chrUn_GL000218v1 3663
chrUn_GL000219v1 24253
chrUn_GL000220v1 9649
chrUn_GL000224v1 5353
chrUn_GL000226v1 16
chrUn_KI270302v1 17
chrUn_KI270303v1 16
chrUn_KI270304v1 22
chrUn_KI270305v1 12
chrUn_KI270310v1 35
chrUn_KI270311v1 50
chrUn_KI270312v1 2
chrUn_KI270315v1 8
chrUn_KI270316v1 2
chrUn_KI270317v1 5
chrUn_KI270320v1 37
chrUn_KI270322v1 36
chrUn_KI270329v1 7
chrUn_KI270330v1 168
chrUn_KI270333v1 136
chrUn_KI270336v1 74
chrUn_KI270337v1 168
chrUn_KI270362v1 17
chrUn_KI270363v1 20
chrUn_KI270364v1 1
chrUn_KI270366v1 12
chrUn_KI270371v1 1
chrUn_KI270374v1 1
chrUn_KI270378v1 3
chrUn_KI270382v1 7
chrUn_KI270384v1 4
chrUn_KI270385v1 1
chrUn_KI270386v1 3
chrUn_KI270387v1 1
chrUn_KI270388v1 6
chrUn_KI270390v1 11
chrUn_KI270391v1 3
chrUn_KI270392v1 4
chrUn_KI270393v1 4
chrUn_KI270394v1 2
chrUn_KI270395v1 9
chrUn_KI270396v1 2
chrUn_KI270411v1 23
chrUn_KI270412v1 9
chrUn_KI270414v1 10
chrUn_KI270417v1 33
chrUn_KI270418v1 2
chrUn_KI270419v1 2
chrUn_KI270420v1 21
chrUn_KI270422v1 16
chrUn_KI270423v1 14
chrUn_KI270424v1 1
chrUn_KI270425v1 1
chrUn_KI270429v1 72
chrUn_KI270435v1 1590
chrUn_KI270438v1 12147
chrUn_KI270442v1 12018
chrUn_KI270448v1 200
chrUn_KI270465v1 29
chrUn_KI270466v1 1510
chrUn_KI270467v1 4051
chrUn_KI270468v1 104
chrUn_KI270507v1 177
chrUn_KI270508v1 139
chrUn_KI270509v1 108
chrUn_KI270510v1 97
chrUn_KI270511v1 178
chrUn_KI270512v1 328
chrUn_KI270515v1 232
chrUn_KI270516v1 40
chrUn_KI270517v1 149
chrUn_KI270518v1 83
chrUn_KI270519v1 2454
chrUn_KI270521v1 107
chrUn_KI270522v1 51
chrUn_KI270529v1 2
chrUn_KI270530v1 11
chrUn_KI270538v1 1747
chrUn_KI270539v1 9
chrUn_KI270544v1 3
chrUn_KI270579v1 7
chrUn_KI270580v1 108
chrUn_KI270581v1 2
chrUn_KI270582v1 23
chrUn_KI270583v1 96
chrUn_KI270584v1 229
chrUn_KI270587v1 374
chrUn_KI270588v1 163
chrUn_KI270589v1 303
chrUn_KI270590v1 177
chrUn_KI270591v1 273
chrUn_KI270593v1 74
chrUn_KI270741v1 79
chrUn_KI270742v1 2482
chrUn_KI270743v1 2160
chrUn_KI270744v1 5000
chrUn_KI270745v1 428
chrUn_KI270746v1 2160
chrUn_KI270747v1 258
chrUn_KI270748v1 115
chrUn_KI270749v1 2113
chrUn_KI270750v1 2862
chrUn_KI270751v1 3090
chrUn_KI270752v1 11
chrUn_KI270753v1 391
chrUn_KI270754v1 461
chrUn_KI270755v1 106
chrUn_KI270756v1 532
chrUn_KI270757v1 989
chrX 9744976
chrY 45621
chrY_KI270740v1_random 13

Fragment lengths

fragments min max mean median
fragments 379059567 7 1992 186.19 119
global fragment-length histogram

Files

Filename Size md5
T398_b15_Liver_PCW17.fragments.tsv.gz 3.23 GB 6ded87c2b0149112e6f4e8c01182179a
T398_b15_Liver_PCW17.fragments.tsv.gz.tbi 1.3 MB 6fd19c65ed83327d966d3cc53b0ec495
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 2211e018507b943b8fa23094a1001da7
statistics/