Resource

Id summary/liu2026Multiomics/atac_fragments/T399_b10_Stomach_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T399_b10_Stomach_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 10
  • modalities: ATAC
  • organ: Stomach
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T399_b10_Stomach_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T399
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL69_A06+D08+F05, CL69_A05+A03+F12, CL72_A09+A09+H11, CL71_A08+C05+C06, CL67_A11+C09+H08 (top 5 of 884735 values)
count int

count
HISTOGRAM FOR count [1, 43]
n
345,423,536
mean
1.41
sd
0.77

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 345423536
chr1 29962381
chr1_KI270706v1_random 3943
chr1_KI270707v1_random 566
chr1_KI270708v1_random 2970
chr1_KI270709v1_random 4135
chr1_KI270710v1_random 986
chr1_KI270711v1_random 2042
chr1_KI270712v1_random 2055
chr1_KI270713v1_random 11501
chr1_KI270714v1_random 2287
chr2 27344665
chr2_KI270715v1_random 209
chr2_KI270716v1_random 476
chr3 22602529
chr3_GL000221v1_random 820
chr4 19193854
chr4_GL000008v2_random 5675
chr5 19279194
chr5_GL000208v1_random 2647
chr6 19794913
chr7 18069980
chr8 15626143
chr9 14388520
chr9_KI270717v1_random 212
chr9_KI270718v1_random 306
chr9_KI270719v1_random 3670
chr9_KI270720v1_random 1579
chr10 15280034
chr11 17704255
chr11_KI270721v1_random 1023
chr12 16535262
chr13 9687344
chr14 10911135
chr14_GL000009v2_random 4201
chr14_GL000194v1_random 4554
chr14_GL000225v1_random 12402
chr14_KI270722v1_random 4604
chr14_KI270723v1_random 1286
chr14_KI270724v1_random 1703
chr14_KI270725v1_random 3045
chr14_KI270726v1_random 134
chr15 9608564
chr15_KI270727v1_random 779
chr16 11187646
chr16_KI270728v1_random 5700
chr17 13604746
chr17_GL000205v2_random 29900
chr17_KI270729v1_random 9459
chr17_KI270730v1_random 1937
chr18 7689022
chr19 12750094
chr20 8000779
chr21 3990240
chr22 5896184
chr22_KI270731v1_random 1396
chr22_KI270732v1_random 2302
chr22_KI270733v1_random 34152
chr22_KI270734v1_random 909
chr22_KI270735v1_random 2914
chr22_KI270736v1_random 5233
chr22_KI270737v1_random 1071
chr22_KI270738v1_random 2910
chr22_KI270739v1_random 61
chrM 5092726
chrUn_GL000195v1 18820
chrUn_GL000213v1 203
chrUn_GL000214v1 1177
chrUn_GL000216v2 9987
chrUn_GL000218v1 4871
chrUn_GL000219v1 14098
chrUn_GL000220v1 6186
chrUn_GL000224v1 7732
chrUn_GL000226v1 40
chrUn_KI270302v1 31
chrUn_KI270303v1 24
chrUn_KI270304v1 34
chrUn_KI270305v1 17
chrUn_KI270310v1 94
chrUn_KI270311v1 95
chrUn_KI270312v1 3
chrUn_KI270315v1 4
chrUn_KI270316v1 4
chrUn_KI270317v1 7
chrUn_KI270320v1 127
chrUn_KI270322v1 95
chrUn_KI270329v1 1
chrUn_KI270330v1 188
chrUn_KI270333v1 208
chrUn_KI270336v1 111
chrUn_KI270337v1 260
chrUn_KI270362v1 30
chrUn_KI270363v1 33
chrUn_KI270366v1 28
chrUn_KI270378v1 7
chrUn_KI270382v1 12
chrUn_KI270384v1 1
chrUn_KI270385v1 9
chrUn_KI270386v1 12
chrUn_KI270387v1 1
chrUn_KI270388v1 2
chrUn_KI270389v1 2
chrUn_KI270390v1 1
chrUn_KI270391v1 1
chrUn_KI270392v1 1
chrUn_KI270393v1 11
chrUn_KI270394v1 1
chrUn_KI270395v1 10
chrUn_KI270396v1 2
chrUn_KI270411v1 47
chrUn_KI270412v1 22
chrUn_KI270414v1 29
chrUn_KI270417v1 84
chrUn_KI270418v1 11
chrUn_KI270419v1 3
chrUn_KI270420v1 38
chrUn_KI270422v1 29
chrUn_KI270423v1 21
chrUn_KI270424v1 5
chrUn_KI270425v1 2
chrUn_KI270429v1 135
chrUn_KI270435v1 3037
chrUn_KI270438v1 24718
chrUn_KI270442v1 20542
chrUn_KI270448v1 377
chrUn_KI270465v1 54
chrUn_KI270466v1 2518
chrUn_KI270467v1 6779
chrUn_KI270468v1 260
chrUn_KI270507v1 360
chrUn_KI270508v1 209
chrUn_KI270509v1 183
chrUn_KI270510v1 124
chrUn_KI270511v1 347
chrUn_KI270512v1 617
chrUn_KI270515v1 534
chrUn_KI270516v1 86
chrUn_KI270517v1 299
chrUn_KI270518v1 164
chrUn_KI270519v1 4911
chrUn_KI270521v1 205
chrUn_KI270522v1 122
chrUn_KI270528v1 3
chrUn_KI270529v1 9
chrUn_KI270530v1 6
chrUn_KI270538v1 3737
chrUn_KI270539v1 12
chrUn_KI270544v1 13
chrUn_KI270579v1 27
chrUn_KI270580v1 153
chrUn_KI270581v1 2
chrUn_KI270582v1 25
chrUn_KI270583v1 146
chrUn_KI270584v1 445
chrUn_KI270587v1 919
chrUn_KI270588v1 391
chrUn_KI270589v1 411
chrUn_KI270590v1 323
chrUn_KI270591v1 508
chrUn_KI270593v1 134
chrUn_KI270741v1 97
chrUn_KI270742v1 2985
chrUn_KI270743v1 3077
chrUn_KI270744v1 6535
chrUn_KI270745v1 421
chrUn_KI270746v1 3744
chrUn_KI270747v1 459
chrUn_KI270748v1 117
chrUn_KI270749v1 3178
chrUn_KI270750v1 5101
chrUn_KI270751v1 5134
chrUn_KI270753v1 425
chrUn_KI270754v1 579
chrUn_KI270755v1 136
chrUn_KI270756v1 1139
chrUn_KI270757v1 1918
chrX 10822438
chrY 49342
chrY_KI270740v1_random 30

Fragment lengths

fragments min max mean median
fragments 345423536 7 1992 274.93 206
global fragment-length histogram

Files

Filename Size md5
T399_b10_Stomach_PCW17.fragments.tsv.gz 3.29 GB 27dd8c9a187592e031ba54eacbf0a5d7
T399_b10_Stomach_PCW17.fragments.tsv.gz.tbi 1.38 MB ee61ac6cf76f0b67e6f5aa3948695678
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 2a67127459cc09978c89644afa561c1b
statistics/