Resource

Id summary/liu2026Multiomics/atac_fragments/T406_b17_Thymus_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T406_b17_Thymus_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Thymus
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T406_b17_Thymus_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T406
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL121_G05+D09+E08, CL128_G11+D02+G03, CL127_G02+F12+C12, CL119_G06+D09+A09, CL128_G06+E11+F12 (top 5 of 1767135 values)
count int

count
HISTOGRAM FOR count [1, 59]
n
600,436,747
mean
1.98
sd
1.58

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 600436747
chr1 51488384
chr1_KI270706v1_random 8931
chr1_KI270707v1_random 1276
chr1_KI270708v1_random 6400
chr1_KI270709v1_random 9994
chr1_KI270710v1_random 2025
chr1_KI270711v1_random 2801
chr1_KI270712v1_random 3670
chr1_KI270713v1_random 12305
chr1_KI270714v1_random 2272
chr2 48310922
chr2_KI270715v1_random 479
chr2_KI270716v1_random 1011
chr3 39358584
chr3_GL000221v1_random 1419
chr4 33204568
chr4_GL000008v2_random 12156
chr5 33612325
chr5_GL000208v1_random 5542
chr6 34385108
chr7 31339769
chr8 27395986
chr9 24238138
chr9_KI270717v1_random 496
chr9_KI270718v1_random 819
chr9_KI270719v1_random 8459
chr9_KI270720v1_random 3267
chr10 27224377
chr11 29990319
chr11_KI270721v1_random 2626
chr12 28476591
chr13 16762446
chr14 19081381
chr14_GL000009v2_random 9938
chr14_GL000194v1_random 11053
chr14_GL000225v1_random 38135
chr14_KI270722v1_random 9544
chr14_KI270723v1_random 2943
chr14_KI270724v1_random 3713
chr14_KI270725v1_random 6927
chr14_KI270726v1_random 5685
chr15 16747113
chr15_KI270727v1_random 2599
chr16 19146708
chr16_KI270728v1_random 19849
chr17 23101813
chr17_GL000205v2_random 46581
chr17_KI270729v1_random 18716
chr17_KI270730v1_random 4804
chr18 13406646
chr19 20940450
chr20 13837882
chr21 6907065
chr22 10175602
chr22_KI270731v1_random 645
chr22_KI270732v1_random 3444
chr22_KI270733v1_random 149236
chr22_KI270734v1_random 2230
chr22_KI270735v1_random 6491
chr22_KI270736v1_random 12768
chr22_KI270737v1_random 2204
chr22_KI270738v1_random 6265
chr22_KI270739v1_random 197
chrM 10119041
chrUn_GL000195v1 30731
chrUn_GL000213v1 459
chrUn_GL000214v1 4380
chrUn_GL000216v2 22411
chrUn_GL000218v1 10961
chrUn_GL000219v1 36277
chrUn_GL000220v1 11773
chrUn_GL000224v1 17305
chrUn_GL000226v1 17
chrUn_KI270302v1 95
chrUn_KI270303v1 18
chrUn_KI270304v1 42
chrUn_KI270305v1 36
chrUn_KI270310v1 204
chrUn_KI270311v1 62
chrUn_KI270316v1 4
chrUn_KI270317v1 4
chrUn_KI270320v1 77
chrUn_KI270322v1 130
chrUn_KI270329v1 3
chrUn_KI270330v1 535
chrUn_KI270333v1 537
chrUn_KI270336v1 237
chrUn_KI270337v1 641
chrUn_KI270362v1 73
chrUn_KI270363v1 52
chrUn_KI270364v1 2
chrUn_KI270366v1 66
chrUn_KI270371v1 2
chrUn_KI270374v1 1
chrUn_KI270378v1 23
chrUn_KI270381v1 1
chrUn_KI270382v1 29
chrUn_KI270383v1 2
chrUn_KI270384v1 19
chrUn_KI270385v1 11
chrUn_KI270386v1 11
chrUn_KI270388v1 8
chrUn_KI270389v1 1
chrUn_KI270390v1 4
chrUn_KI270391v1 2
chrUn_KI270392v1 15
chrUn_KI270393v1 34
chrUn_KI270394v1 3
chrUn_KI270395v1 22
chrUn_KI270396v1 8
chrUn_KI270411v1 41
chrUn_KI270412v1 7
chrUn_KI270414v1 33
chrUn_KI270417v1 78
chrUn_KI270418v1 55
chrUn_KI270419v1 33
chrUn_KI270420v1 92
chrUn_KI270422v1 5
chrUn_KI270423v1 4
chrUn_KI270424v1 45
chrUn_KI270425v1 20
chrUn_KI270429v1 271
chrUn_KI270435v1 6564
chrUn_KI270438v1 68792
chrUn_KI270442v1 45947
chrUn_KI270448v1 840
chrUn_KI270465v1 73
chrUn_KI270466v1 3885
chrUn_KI270467v1 11138
chrUn_KI270468v1 513
chrUn_KI270507v1 922
chrUn_KI270508v1 405
chrUn_KI270509v1 417
chrUn_KI270510v1 315
chrUn_KI270511v1 760
chrUn_KI270512v1 1206
chrUn_KI270515v1 1169
chrUn_KI270516v1 197
chrUn_KI270517v1 603
chrUn_KI270518v1 369
chrUn_KI270519v1 10914
chrUn_KI270521v1 401
chrUn_KI270522v1 217
chrUn_KI270528v1 1
chrUn_KI270529v1 21
chrUn_KI270530v1 32
chrUn_KI270538v1 9319
chrUn_KI270539v1 16
chrUn_KI270544v1 24
chrUn_KI270579v1 27
chrUn_KI270580v1 294
chrUn_KI270581v1 9
chrUn_KI270582v1 81
chrUn_KI270583v1 296
chrUn_KI270584v1 896
chrUn_KI270587v1 115
chrUn_KI270588v1 914
chrUn_KI270589v1 1031
chrUn_KI270590v1 760
chrUn_KI270591v1 1207
chrUn_KI270593v1 299
chrUn_KI270741v1 389
chrUn_KI270742v1 9016
chrUn_KI270743v1 1506
chrUn_KI270744v1 11854
chrUn_KI270745v1 434
chrUn_KI270746v1 8571
chrUn_KI270747v1 906
chrUn_KI270748v1 511
chrUn_KI270749v1 6914
chrUn_KI270750v1 10187
chrUn_KI270751v1 9641
chrUn_KI270753v1 839
chrUn_KI270754v1 1815
chrUn_KI270755v1 311
chrUn_KI270756v1 2104
chrUn_KI270757v1 3846
chrX 20254041
chrY 103676
chrY_KI270740v1_random 52

Fragment lengths

fragments min max mean median
fragments 600436747 7 1992 262.73 191
global fragment-length histogram

Files

Filename Size md5
T406_b17_Thymus_PCW19.fragments.tsv.gz 5.57 GB de04b3b0937439c83fc2824bc0648468
T406_b17_Thymus_PCW19.fragments.tsv.gz.tbi 1.67 MB 246bc6234bf37f40549d0b03ab856c37
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.45 KB 86aaf037246cd759bab3c1f60ea24a43
statistics/