Resource

Id summary/liu2026Multiomics/atac_fragments/T407_b11_Heart_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T407_b11_Heart_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T407_b11_Heart_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T407
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell

HISTOGRAM FOR cell CL75_E06+E06+A11, CL77_E04+F02+D12, CL77_E02+B05+A05, CL80_E01+F04+G12, CL73_E02+E07+C06 (top 5 of 884736 values)
count int

count

HISTOGRAM FOR count [1, 18]
n
202,590,134
mean
1.21
sd
0.524

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 202590134
chr1 18802583
chr1_KI270706v1_random 933
chr1_KI270707v1_random 114
chr1_KI270708v1_random 419
chr1_KI270709v1_random 946
chr1_KI270710v1_random 163
chr1_KI270711v1_random 338
chr1_KI270712v1_random 567
chr1_KI270713v1_random 5350
chr1_KI270714v1_random 714
chr2 15648351
chr2_KI270715v1_random 31
chr2_KI270716v1_random 119
chr3 13085332
chr3_GL000221v1_random 168
chr4 9911449
chr4_GL000008v2_random 1542
chr5 11130260
chr5_GL000208v1_random 576
chr6 11373054
chr7 10114163
chr8 8893499
chr9 8295295
chr9_KI270717v1_random 116
chr9_KI270718v1_random 100
chr9_KI270719v1_random 821
chr9_KI270720v1_random 378
chr10 9695122
chr11 10517090
chr11_KI270721v1_random 554
chr12 9796862
chr13 5182581
chr14 6172707
chr14_GL000009v2_random 927
chr14_GL000194v1_random 1627
chr14_GL000225v1_random 4184
chr14_KI270722v1_random 796
chr14_KI270723v1_random 301
chr14_KI270724v1_random 283
chr14_KI270725v1_random 644
chr14_KI270726v1_random 298
chr15 6480004
chr15_KI270727v1_random 309
chr16 6675647
chr16_KI270728v1_random 1277
chr17 9231265
chr17_GL000205v2_random 11502
chr17_KI270729v1_random 2575
chr17_KI270730v1_random 540
chr18 4400482
chr19 8715384
chr20 4863521
chr21 2091014
chr22 4059940
chr22_KI270731v1_random 315
chr22_KI270732v1_random 488
chr22_KI270733v1_random 68885
chr22_KI270734v1_random 807
chr22_KI270735v1_random 707
chr22_KI270736v1_random 1779
chr22_KI270737v1_random 205
chr22_KI270738v1_random 683
chr22_KI270739v1_random 19
chrM 2928943
chrUn_GL000195v1 17967
chrUn_GL000213v1 64
chrUn_GL000214v1 531
chrUn_GL000216v2 2146
chrUn_GL000218v1 1364
chrUn_GL000219v1 14656
chrUn_GL000220v1 3280
chrUn_GL000224v1 1963
chrUn_GL000226v1 4
chrUn_KI270302v1 7
chrUn_KI270303v1 3
chrUn_KI270304v1 3
chrUn_KI270310v1 13
chrUn_KI270311v1 7
chrUn_KI270316v1 1
chrUn_KI270320v1 20
chrUn_KI270322v1 16
chrUn_KI270330v1 62
chrUn_KI270333v1 73
chrUn_KI270336v1 28
chrUn_KI270337v1 82
chrUn_KI270362v1 15
chrUn_KI270363v1 5
chrUn_KI270366v1 5
chrUn_KI270378v1 4
chrUn_KI270381v1 1
chrUn_KI270382v1 2
chrUn_KI270383v1 1
chrUn_KI270384v1 1
chrUn_KI270385v1 1
chrUn_KI270389v1 1
chrUn_KI270390v1 1
chrUn_KI270391v1 2
chrUn_KI270392v1 1
chrUn_KI270393v1 5
chrUn_KI270395v1 1
chrUn_KI270411v1 1
chrUn_KI270412v1 2
chrUn_KI270414v1 1
chrUn_KI270417v1 15
chrUn_KI270418v1 6
chrUn_KI270419v1 3
chrUn_KI270420v1 21
chrUn_KI270422v1 9
chrUn_KI270423v1 3
chrUn_KI270424v1 2
chrUn_KI270425v1 3
chrUn_KI270429v1 26
chrUn_KI270435v1 670
chrUn_KI270438v1 7793
chrUn_KI270442v1 5172
chrUn_KI270448v1 86
chrUn_KI270465v1 22
chrUn_KI270466v1 463
chrUn_KI270467v1 1565
chrUn_KI270468v1 65
chrUn_KI270507v1 119
chrUn_KI270508v1 55
chrUn_KI270509v1 49
chrUn_KI270510v1 27
chrUn_KI270511v1 63
chrUn_KI270512v1 163
chrUn_KI270515v1 129
chrUn_KI270516v1 24
chrUn_KI270517v1 53
chrUn_KI270518v1 37
chrUn_KI270519v1 1219
chrUn_KI270521v1 39
chrUn_KI270522v1 16
chrUn_KI270529v1 3
chrUn_KI270530v1 5
chrUn_KI270538v1 860
chrUn_KI270539v1 4
chrUn_KI270544v1 2
chrUn_KI270579v1 6
chrUn_KI270580v1 26
chrUn_KI270581v1 2
chrUn_KI270582v1 15
chrUn_KI270583v1 36
chrUn_KI270584v1 91
chrUn_KI270587v1 33
chrUn_KI270588v1 94
chrUn_KI270589v1 128
chrUn_KI270590v1 72
chrUn_KI270591v1 125
chrUn_KI270593v1 32
chrUn_KI270741v1 50
chrUn_KI270742v1 882
chrUn_KI270743v1 438
chrUn_KI270744v1 1303
chrUn_KI270745v1 39
chrUn_KI270746v1 861
chrUn_KI270747v1 127
chrUn_KI270748v1 60
chrUn_KI270749v1 738
chrUn_KI270750v1 1084
chrUn_KI270751v1 1165
chrUn_KI270753v1 88
chrUn_KI270754v1 219
chrUn_KI270755v1 64
chrUn_KI270756v1 360
chrUn_KI270757v1 440
chrX 4268097
chrY 74636
chrY_KI270740v1_random 44

Fragment lengths

fragments min max mean median
fragments 202590134 7 1992 218.63 156
global fragment-length histogram

Files

Filename Size md5
T407_b11_Heart_PCW19.fragments.tsv.gz 1.82 GB 47ff3f4864fa2ae7afb99ae4812ce597
T407_b11_Heart_PCW19.fragments.tsv.gz.tbi 1000.97 KB 515839333a21a544afecf5b7abd81029
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 4e6fccc010b9388577766c20678a1db8
statistics/