Resource

Id summary/liu2026Multiomics/atac_fragments/T408S_b19_Skin_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T408S_b19_Skin_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 19
  • modalities: ATAC
  • organ: Skin
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T408S_b19_Skin_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T408S
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL142_E03+G03+C08, CL143_D03+B12+H09, CL147_F03+G02+B09, CL144_E02+H11+D05, CL142_D01+C01+A12 (top 5 of 1327104 values)
count int

count
HISTOGRAM FOR count [1, 31]
n
650,853,276
mean
1.25
sd
0.563

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 650853276
chr1 54477987
chr1_KI270706v1_random 11038
chr1_KI270707v1_random 1685
chr1_KI270708v1_random 8523
chr1_KI270709v1_random 16679
chr1_KI270710v1_random 3278
chr1_KI270711v1_random 2114
chr1_KI270712v1_random 3908
chr1_KI270713v1_random 11899
chr1_KI270714v1_random 2390
chr2 53312603
chr2_KI270715v1_random 856
chr2_KI270716v1_random 1875
chr3 44457443
chr3_GL000221v1_random 1714
chr4 39204537
chr4_GL000008v2_random 16312
chr5 38190120
chr5_GL000208v1_random 8840
chr6 38343908
chr7 34939437
chr8 31340686
chr9 26736928
chr9_KI270717v1_random 429
chr9_KI270718v1_random 952
chr9_KI270719v1_random 11816
chr9_KI270720v1_random 5019
chr10 29304274
chr11 32611521
chr11_KI270721v1_random 1321
chr12 31300827
chr13 19491229
chr14 20381126
chr14_GL000009v2_random 13463
chr14_GL000194v1_random 12062
chr14_GL000225v1_random 46525
chr14_KI270722v1_random 14274
chr14_KI270723v1_random 3472
chr14_KI270724v1_random 4430
chr14_KI270725v1_random 9920
chr14_KI270726v1_random 6585
chr15 17500395
chr15_KI270727v1_random 2796
chr16 19957139
chr16_KI270728v1_random 25517
chr17 22511768
chr17_GL000205v2_random 53431
chr17_KI270729v1_random 39004
chr17_KI270730v1_random 8470
chr18 15416789
chr19 20042136
chr20 14393595
chr21 7627521
chr22 9792806
chr22_KI270731v1_random 570
chr22_KI270732v1_random 5034
chr22_KI270733v1_random 106562
chr22_KI270734v1_random 1979
chr22_KI270735v1_random 10538
chr22_KI270736v1_random 20227
chr22_KI270737v1_random 3721
chr22_KI270738v1_random 11253
chr22_KI270739v1_random 337
chrM 4461858
chrUn_GL000195v1 27858
chrUn_GL000213v1 636
chrUn_GL000214v1 4475
chrUn_GL000216v2 40899
chrUn_GL000218v1 13792
chrUn_GL000219v1 38662
chrUn_GL000220v1 9773
chrUn_GL000224v1 21470
chrUn_GL000226v1 15
chrUn_KI270302v1 123
chrUn_KI270303v1 38
chrUn_KI270304v1 65
chrUn_KI270305v1 46
chrUn_KI270310v1 331
chrUn_KI270311v1 125
chrUn_KI270315v1 4
chrUn_KI270317v1 7
chrUn_KI270320v1 141
chrUn_KI270322v1 188
chrUn_KI270329v1 6
chrUn_KI270330v1 526
chrUn_KI270333v1 1339
chrUn_KI270336v1 570
chrUn_KI270337v1 1628
chrUn_KI270340v1 1
chrUn_KI270362v1 113
chrUn_KI270363v1 49
chrUn_KI270364v1 7
chrUn_KI270366v1 101
chrUn_KI270371v1 1
chrUn_KI270374v1 1
chrUn_KI270378v1 28
chrUn_KI270382v1 43
chrUn_KI270383v1 4
chrUn_KI270384v1 16
chrUn_KI270385v1 14
chrUn_KI270386v1 18
chrUn_KI270387v1 6
chrUn_KI270388v1 7
chrUn_KI270389v1 4
chrUn_KI270390v1 8
chrUn_KI270391v1 3
chrUn_KI270392v1 23
chrUn_KI270393v1 33
chrUn_KI270394v1 5
chrUn_KI270395v1 13
chrUn_KI270396v1 5
chrUn_KI270411v1 50
chrUn_KI270412v1 16
chrUn_KI270414v1 54
chrUn_KI270417v1 173
chrUn_KI270418v1 64
chrUn_KI270419v1 41
chrUn_KI270420v1 141
chrUn_KI270422v1 13
chrUn_KI270423v1 6
chrUn_KI270424v1 89
chrUn_KI270425v1 55
chrUn_KI270429v1 527
chrUn_KI270435v1 11550
chrUn_KI270438v1 156021
chrUn_KI270442v1 73496
chrUn_KI270448v1 1593
chrUn_KI270465v1 177
chrUn_KI270466v1 9038
chrUn_KI270467v1 25871
chrUn_KI270468v1 884
chrUn_KI270507v1 1622
chrUn_KI270508v1 533
chrUn_KI270509v1 746
chrUn_KI270510v1 477
chrUn_KI270511v1 1469
chrUn_KI270512v1 2026
chrUn_KI270515v1 2178
chrUn_KI270516v1 408
chrUn_KI270517v1 1025
chrUn_KI270518v1 561
chrUn_KI270519v1 19620
chrUn_KI270521v1 703
chrUn_KI270522v1 342
chrUn_KI270528v1 8
chrUn_KI270529v1 42
chrUn_KI270530v1 97
chrUn_KI270538v1 14141
chrUn_KI270539v1 34
chrUn_KI270544v1 44
chrUn_KI270579v1 42
chrUn_KI270580v1 542
chrUn_KI270581v1 15
chrUn_KI270582v1 110
chrUn_KI270583v1 513
chrUn_KI270584v1 1557
chrUn_KI270587v1 69
chrUn_KI270588v1 1582
chrUn_KI270589v1 1564
chrUn_KI270590v1 1284
chrUn_KI270591v1 2102
chrUn_KI270593v1 577
chrUn_KI270741v1 464
chrUn_KI270742v1 11419
chrUn_KI270743v1 2071
chrUn_KI270744v1 13244
chrUn_KI270745v1 451
chrUn_KI270746v1 13718
chrUn_KI270747v1 1281
chrUn_KI270748v1 672
chrUn_KI270749v1 10208
chrUn_KI270750v1 16123
chrUn_KI270751v1 15085
chrUn_KI270753v1 995
chrUn_KI270754v1 1977
chrUn_KI270755v1 294
chrUn_KI270756v1 4579
chrUn_KI270757v1 6536
chrX 23828157
chrY 119365
chrY_KI270740v1_random 74

Fragment lengths

fragments min max mean median
fragments 650853276 7 1992 261.29 201
global fragment-length histogram

Files

Filename Size md5
T408S_b19_Skin_PCW19.fragments.tsv.gz 6.13 GB cf2c008851c54b87d8defd6c00d12f80
T408S_b19_Skin_PCW19.fragments.tsv.gz.tbi 1.63 MB 0bf5ac8849d286227c6f231139744004
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB f340526deed083f520781266bcfd83c2
statistics/