Resource

Id summary/liu2026Multiomics/atac_fragments/T40_b16_Adr_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T40_b16_Adr_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 16
  • modalities: ATAC
  • organ: Adr
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T40_b16_Adr_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T40
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL131_B04+A07+A07, CL131_B01+B12+A12, CL131_B06+D05+H04, CL131_B01+H10+A09, CL131_B04+B08+E09 (top 5 of 199601 values)
count int

count
HISTOGRAM FOR count [1, 139]
n
25,233,404
mean
6.41
sd
8.07

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 25233404
chr1 2198045
chr1_KI270706v1_random 278
chr1_KI270707v1_random 26
chr1_KI270708v1_random 101
chr1_KI270709v1_random 177
chr1_KI270710v1_random 35
chr1_KI270711v1_random 184
chr1_KI270712v1_random 150
chr1_KI270713v1_random 1785
chr1_KI270714v1_random 220
chr2 1957935
chr2_KI270715v1_random 8
chr2_KI270716v1_random 15
chr3 1600910
chr3_GL000221v1_random 79
chr4 1270580
chr4_GL000008v2_random 350
chr5 1370126
chr5_GL000208v1_random 123
chr6 1374711
chr7 1299900
chr8 1127919
chr9 1044058
chr9_KI270717v1_random 22
chr9_KI270718v1_random 22
chr9_KI270719v1_random 247
chr9_KI270720v1_random 98
chr10 1130288
chr11 1265534
chr11_KI270721v1_random 188
chr12 1199554
chr13 694784
chr14 805020
chr14_GL000009v2_random 338
chr14_GL000194v1_random 371
chr14_GL000225v1_random 1213
chr14_KI270722v1_random 385
chr14_KI270723v1_random 132
chr14_KI270724v1_random 68
chr14_KI270725v1_random 157
chr14_KI270726v1_random 29
chr15 735185
chr15_KI270727v1_random 70
chr16 862075
chr16_KI270728v1_random 85
chr17 1047660
chr17_GL000205v2_random 2446
chr17_KI270729v1_random 340
chr17_KI270730v1_random 114
chr18 572056
chr19 1019712
chr20 646361
chr21 285703
chr22 475581
chr22_KI270731v1_random 22
chr22_KI270732v1_random 99
chr22_KI270733v1_random 6118
chr22_KI270734v1_random 81
chr22_KI270735v1_random 201
chr22_KI270736v1_random 366
chr22_KI270737v1_random 46
chr22_KI270738v1_random 109
chr22_KI270739v1_random 1
chrM 503397
chrUn_GL000195v1 1953
chrUn_GL000213v1 16
chrUn_GL000214v1 116
chrUn_GL000216v2 366
chrUn_GL000218v1 223
chrUn_GL000219v1 1381
chrUn_GL000220v1 864
chrUn_GL000224v1 537
chrUn_KI270302v1 3
chrUn_KI270304v1 5
chrUn_KI270305v1 2
chrUn_KI270310v1 2
chrUn_KI270311v1 3
chrUn_KI270320v1 4
chrUn_KI270322v1 4
chrUn_KI270330v1 26
chrUn_KI270333v1 5
chrUn_KI270336v1 5
chrUn_KI270337v1 6
chrUn_KI270366v1 2
chrUn_KI270378v1 2
chrUn_KI270382v1 1
chrUn_KI270411v1 2
chrUn_KI270422v1 1
chrUn_KI270429v1 7
chrUn_KI270435v1 143
chrUn_KI270438v1 2205
chrUn_KI270442v1 979
chrUn_KI270448v1 17
chrUn_KI270466v1 77
chrUn_KI270467v1 215
chrUn_KI270468v1 9
chrUn_KI270507v1 14
chrUn_KI270508v1 5
chrUn_KI270509v1 1
chrUn_KI270510v1 7
chrUn_KI270511v1 5
chrUn_KI270512v1 29
chrUn_KI270515v1 19
chrUn_KI270516v1 2
chrUn_KI270517v1 15
chrUn_KI270518v1 3
chrUn_KI270519v1 201
chrUn_KI270521v1 7
chrUn_KI270522v1 2
chrUn_KI270538v1 154
chrUn_KI270539v1 3
chrUn_KI270544v1 4
chrUn_KI270579v1 4
chrUn_KI270580v1 3
chrUn_KI270582v1 3
chrUn_KI270583v1 3
chrUn_KI270584v1 9
chrUn_KI270587v1 1
chrUn_KI270588v1 19
chrUn_KI270589v1 25
chrUn_KI270590v1 19
chrUn_KI270591v1 25
chrUn_KI270593v1 6
chrUn_KI270741v1 15
chrUn_KI270742v1 233
chrUn_KI270743v1 184
chrUn_KI270744v1 410
chrUn_KI270745v1 18
chrUn_KI270746v1 173
chrUn_KI270747v1 21
chrUn_KI270748v1 26
chrUn_KI270749v1 187
chrUn_KI270750v1 237
chrUn_KI270751v1 250
chrUn_KI270753v1 33
chrUn_KI270754v1 52
chrUn_KI270755v1 37
chrUn_KI270756v1 37
chrUn_KI270757v1 90
chrX 714291
chrY 3345
chrY_KI270740v1_random 3

Fragment lengths

fragments min max mean median
fragments 25233404 7 1992 267.03 197
global fragment-length histogram

Files

Filename Size md5
T40_b16_Adr_PCW17.fragments.tsv.gz 233.49 MB bbf11d5852fafed91bc623c698cb4d90
T40_b16_Adr_PCW17.fragments.tsv.gz.tbi 563.33 KB 70cd13f584404a59559f729acdef7819
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 219f94e4031f9271ff9b987ebfce2406
statistics/