Resource

Id summary/liu2026Multiomics/atac_fragments/T410_b13_Eye_PCW13content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T410_b13_Eye_PCW13 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 13
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T410_b13_Eye_PCW13
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T410
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL95_G02+H07+C02, CL94_G03+H09+E05, CL95_G04+A09+H02, CL94_G02+C02+G09, CL93_G12+D08+D07 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 23]
n
481,713,354
mean
1.72
sd
1.24

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 481713354
chr1 41446124
chr1_KI270706v1_random 4140
chr1_KI270707v1_random 853
chr1_KI270708v1_random 321
chr1_KI270709v1_random 5555
chr1_KI270710v1_random 258
chr1_KI270711v1_random 2421
chr1_KI270712v1_random 1696
chr1_KI270713v1_random 6360
chr1_KI270714v1_random 5121
chr2 38928595
chr2_KI270715v1_random 364
chr2_KI270716v1_random 691
chr3 31803168
chr3_GL000221v1_random 1033
chr4 28070017
chr4_GL000008v2_random 6257
chr5 27753743
chr5_GL000208v1_random 3313
chr6 27603189
chr7 25744134
chr8 22362032
chr9 20113200
chr9_KI270717v1_random 359
chr9_KI270718v1_random 895
chr9_KI270719v1_random 5298
chr9_KI270720v1_random 2032
chr10 22009209
chr11 25286998
chr11_KI270721v1_random 1056
chr12 23150823
chr13 14328875
chr14 15368945
chr14_GL000009v2_random 4939
chr14_GL000194v1_random 4417
chr14_GL000225v1_random 14060
chr14_KI270722v1_random 4149
chr14_KI270723v1_random 1524
chr14_KI270724v1_random 594
chr14_KI270725v1_random 4069
chr14_KI270726v1_random 933
chr15 13407933
chr15_KI270727v1_random 1055
chr16 15042961
chr16_KI270728v1_random 5724
chr17 18244032
chr17_GL000205v2_random 29321
chr17_KI270729v1_random 12349
chr17_KI270730v1_random 2860
chr18 11776421
chr19 15941037
chr20 11371630
chr21 5520420
chr22 8006073
chr22_KI270731v1_random 853
chr22_KI270732v1_random 3178
chr22_KI270733v1_random 32164
chr22_KI270734v1_random 1148
chr22_KI270735v1_random 4189
chr22_KI270736v1_random 6956
chr22_KI270737v1_random 1190
chr22_KI270738v1_random 4249
chr22_KI270739v1_random 73
chrM 2761251
chrUn_GL000195v1 19828
chrUn_GL000213v1 272
chrUn_GL000214v1 1035
chrUn_GL000216v2 4065
chrUn_GL000218v1 7345
chrUn_GL000219v1 18454
chrUn_GL000220v1 6641
chrUn_GL000224v1 10785
chrUn_GL000226v1 43
chrUn_KI270302v1 20
chrUn_KI270303v1 29
chrUn_KI270304v1 59
chrUn_KI270305v1 21
chrUn_KI270310v1 117
chrUn_KI270311v1 51
chrUn_KI270312v1 6
chrUn_KI270315v1 2
chrUn_KI270316v1 4
chrUn_KI270317v1 11
chrUn_KI270320v1 106
chrUn_KI270322v1 84
chrUn_KI270329v1 4
chrUn_KI270330v1 349
chrUn_KI270333v1 185
chrUn_KI270336v1 124
chrUn_KI270337v1 282
chrUn_KI270362v1 43
chrUn_KI270363v1 36
chrUn_KI270364v1 3
chrUn_KI270366v1 45
chrUn_KI270371v1 2
chrUn_KI270378v1 6
chrUn_KI270382v1 7
chrUn_KI270383v1 2
chrUn_KI270384v1 10
chrUn_KI270385v1 6
chrUn_KI270386v1 7
chrUn_KI270388v1 8
chrUn_KI270389v1 3
chrUn_KI270390v1 4
chrUn_KI270391v1 2
chrUn_KI270392v1 3
chrUn_KI270393v1 8
chrUn_KI270394v1 1
chrUn_KI270395v1 7
chrUn_KI270411v1 12
chrUn_KI270412v1 11
chrUn_KI270414v1 7
chrUn_KI270417v1 110
chrUn_KI270418v1 30
chrUn_KI270419v1 5
chrUn_KI270420v1 63
chrUn_KI270422v1 91
chrUn_KI270423v1 23
chrUn_KI270424v1 5
chrUn_KI270425v1 6
chrUn_KI270429v1 226
chrUn_KI270435v1 4211
chrUn_KI270438v1 43292
chrUn_KI270442v1 25575
chrUn_KI270448v1 578
chrUn_KI270465v1 52
chrUn_KI270466v1 3279
chrUn_KI270467v1 9272
chrUn_KI270468v1 299
chrUn_KI270507v1 508
chrUn_KI270508v1 243
chrUn_KI270509v1 295
chrUn_KI270510v1 162
chrUn_KI270511v1 500
chrUn_KI270512v1 649
chrUn_KI270515v1 737
chrUn_KI270516v1 127
chrUn_KI270517v1 348
chrUn_KI270518v1 202
chrUn_KI270519v1 5681
chrUn_KI270521v1 265
chrUn_KI270522v1 129
chrUn_KI270528v1 1
chrUn_KI270529v1 8
chrUn_KI270530v1 19
chrUn_KI270538v1 4645
chrUn_KI270539v1 36
chrUn_KI270544v1 29
chrUn_KI270579v1 34
chrUn_KI270580v1 180
chrUn_KI270581v1 10
chrUn_KI270582v1 47
chrUn_KI270583v1 165
chrUn_KI270584v1 495
chrUn_KI270587v1 1152
chrUn_KI270588v1 641
chrUn_KI270589v1 575
chrUn_KI270590v1 434
chrUn_KI270591v1 723
chrUn_KI270593v1 209
chrUn_KI270741v1 185
chrUn_KI270742v1 3412
chrUn_KI270743v1 4380
chrUn_KI270744v1 8364
chrUn_KI270745v1 296
chrUn_KI270746v1 4763
chrUn_KI270747v1 614
chrUn_KI270748v1 164
chrUn_KI270749v1 4486
chrUn_KI270750v1 6471
chrUn_KI270751v1 6271
chrUn_KI270753v1 525
chrUn_KI270754v1 1058
chrUn_KI270755v1 467
chrUn_KI270756v1 1772
chrUn_KI270757v1 2342
chrX 15218237
chrY 44175
chrY_KI270740v1_random 24

Fragment lengths

fragments min max mean median
fragments 481713354 7 1992 286.59 213
global fragment-length histogram

Files

Filename Size md5
T410_b13_Eye_PCW13.fragments.tsv.gz 4.51 GB 21e11c1aea339730cc9d8d5aa22eb9b1
T410_b13_Eye_PCW13.fragments.tsv.gz.tbi 1.55 MB 4b818a18190535c795dc44836ae58d0c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB ea2ee7de72bbe038a877907b46c0dcb5
statistics/