Resource

Id summary/liu2026Multiomics/atac_fragments/T44_b9_Muscle_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T44_b9_Muscle_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 9
  • modalities: ATAC
  • organ: Muscle
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T44_b9_Muscle_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T44
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL60_D02+A07+F09, CL62_D09+C09+A06, CL60_D02+D09+B03, CL61_D12+C08+B03, CL61_D02+E06+H12 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 22]
n
437,422,885
mean
1.24
sd
0.568

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 437422885
chr1 36821747
chr1_KI270706v1_random 5831
chr1_KI270707v1_random 987
chr1_KI270708v1_random 1947
chr1_KI270709v1_random 4801
chr1_KI270710v1_random 735
chr1_KI270711v1_random 1594
chr1_KI270712v1_random 2780
chr1_KI270713v1_random 19721
chr1_KI270714v1_random 2850
chr2 35234069
chr2_KI270715v1_random 101
chr2_KI270716v1_random 431
chr3 29111751
chr3_GL000221v1_random 939
chr4 24396090
chr4_GL000008v2_random 8187
chr5 24927286
chr5_GL000208v1_random 2268
chr6 25091895
chr7 23491959
chr8 20558995
chr9 17898097
chr9_KI270717v1_random 249
chr9_KI270718v1_random 542
chr9_KI270719v1_random 5043
chr9_KI270720v1_random 2149
chr10 20359717
chr11 22084967
chr11_KI270721v1_random 1400
chr12 20699811
chr13 12721780
chr14 13971501
chr14_GL000009v2_random 8394
chr14_GL000194v1_random 6860
chr14_GL000225v1_random 38106
chr14_KI270722v1_random 8753
chr14_KI270723v1_random 2941
chr14_KI270724v1_random 2064
chr14_KI270725v1_random 3931
chr14_KI270726v1_random 890
chr15 12232674
chr15_KI270727v1_random 878
chr16 14014028
chr16_KI270728v1_random 2168
chr17 15540338
chr17_GL000205v2_random 37083
chr17_KI270729v1_random 10537
chr17_KI270730v1_random 2738
chr18 10726434
chr19 14277634
chr20 10393409
chr21 4880088
chr22 6808517
chr22_KI270731v1_random 420
chr22_KI270732v1_random 2744
chr22_KI270733v1_random 28897
chr22_KI270734v1_random 964
chr22_KI270735v1_random 4193
chr22_KI270736v1_random 9796
chr22_KI270737v1_random 993
chr22_KI270738v1_random 2756
chr22_KI270739v1_random 39
chrM 5403383
chrUn_GL000195v1 23687
chrUn_GL000213v1 248
chrUn_GL000214v1 1989
chrUn_GL000216v2 11524
chrUn_GL000218v1 5614
chrUn_GL000219v1 16806
chrUn_GL000220v1 7069
chrUn_GL000224v1 10936
chrUn_GL000226v1 5
chrUn_KI270302v1 31
chrUn_KI270303v1 30
chrUn_KI270304v1 49
chrUn_KI270305v1 10
chrUn_KI270310v1 73
chrUn_KI270311v1 44
chrUn_KI270312v1 2
chrUn_KI270315v1 3
chrUn_KI270316v1 1
chrUn_KI270317v1 4
chrUn_KI270320v1 87
chrUn_KI270322v1 93
chrUn_KI270329v1 1
chrUn_KI270330v1 418
chrUn_KI270333v1 113
chrUn_KI270336v1 77
chrUn_KI270337v1 192
chrUn_KI270362v1 30
chrUn_KI270363v1 18
chrUn_KI270364v1 2
chrUn_KI270366v1 16
chrUn_KI270378v1 2
chrUn_KI270382v1 10
chrUn_KI270383v1 2
chrUn_KI270384v1 3
chrUn_KI270385v1 4
chrUn_KI270388v1 1
chrUn_KI270389v1 1
chrUn_KI270390v1 2
chrUn_KI270392v1 2
chrUn_KI270393v1 8
chrUn_KI270394v1 1
chrUn_KI270395v1 1
chrUn_KI270396v1 1
chrUn_KI270411v1 16
chrUn_KI270412v1 10
chrUn_KI270414v1 16
chrUn_KI270417v1 67
chrUn_KI270418v1 25
chrUn_KI270419v1 9
chrUn_KI270420v1 49
chrUn_KI270422v1 29
chrUn_KI270423v1 6
chrUn_KI270424v1 3
chrUn_KI270425v1 3
chrUn_KI270429v1 178
chrUn_KI270435v1 3326
chrUn_KI270438v1 59922
chrUn_KI270442v1 28442
chrUn_KI270448v1 403
chrUn_KI270465v1 41
chrUn_KI270466v1 1699
chrUn_KI270467v1 5216
chrUn_KI270468v1 200
chrUn_KI270507v1 466
chrUn_KI270508v1 253
chrUn_KI270509v1 184
chrUn_KI270510v1 151
chrUn_KI270511v1 344
chrUn_KI270512v1 802
chrUn_KI270515v1 512
chrUn_KI270516v1 130
chrUn_KI270517v1 284
chrUn_KI270518v1 140
chrUn_KI270519v1 4882
chrUn_KI270521v1 177
chrUn_KI270522v1 102
chrUn_KI270528v1 1
chrUn_KI270529v1 8
chrUn_KI270530v1 6
chrUn_KI270538v1 3234
chrUn_KI270539v1 16
chrUn_KI270544v1 12
chrUn_KI270579v1 30
chrUn_KI270580v1 175
chrUn_KI270581v1 8
chrUn_KI270582v1 34
chrUn_KI270583v1 192
chrUn_KI270584v1 446
chrUn_KI270587v1 79
chrUn_KI270588v1 437
chrUn_KI270589v1 571
chrUn_KI270590v1 420
chrUn_KI270591v1 748
chrUn_KI270593v1 152
chrUn_KI270741v1 162
chrUn_KI270742v1 4561
chrUn_KI270743v1 3986
chrUn_KI270744v1 11231
chrUn_KI270745v1 271
chrUn_KI270746v1 4408
chrUn_KI270747v1 409
chrUn_KI270748v1 186
chrUn_KI270749v1 3975
chrUn_KI270750v1 6327
chrUn_KI270751v1 6995
chrUn_KI270753v1 812
chrUn_KI270754v1 924
chrUn_KI270755v1 461
chrUn_KI270756v1 869
chrUn_KI270757v1 2079
chrX 15223382
chrY 73074
chrY_KI270740v1_random 37

Fragment lengths

fragments min max mean median
fragments 437422885 7 1992 250.3 194
global fragment-length histogram

Files

Filename Size md5
T44_b9_Muscle_PCW17.fragments.tsv.gz 3.97 GB a597d50e30472e44963b91912009067b
T44_b9_Muscle_PCW17.fragments.tsv.gz.tbi 1.47 MB d4585a89955ca4adaf61e3f1516f7e7e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 03fc775059d63582a47cf7a913f6c304
statistics/