Resource

Id summary/liu2026Multiomics/atac_fragments/T45_b19_Skin_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T45_b19_Skin_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 19
  • modalities: ATAC
  • organ: Skin
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T45_b19_Skin_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T45
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL148_C06+B09+G05, CL146_C03+G10+H03, CL142_C05+A10+A05, CL148_C02+H07+H11, CL145_B01+H10+F06 (top 5 of 1327104 values)
count int

count
HISTOGRAM FOR count [1, 27]
n
677,695,770
mean
1.26
sd
0.578

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 677695770
chr1 58085236
chr1_KI270706v1_random 9069
chr1_KI270707v1_random 1381
chr1_KI270708v1_random 3450
chr1_KI270709v1_random 7955
chr1_KI270710v1_random 1224
chr1_KI270711v1_random 2677
chr1_KI270712v1_random 4313
chr1_KI270713v1_random 28942
chr1_KI270714v1_random 4480
chr2 54991608
chr2_KI270715v1_random 307
chr2_KI270716v1_random 898
chr3 45170538
chr3_GL000221v1_random 1436
chr4 37548037
chr4_GL000008v2_random 12858
chr5 39346585
chr5_GL000208v1_random 4407
chr6 38936102
chr7 36051518
chr8 31951004
chr9 28307172
chr9_KI270717v1_random 455
chr9_KI270718v1_random 639
chr9_KI270719v1_random 8288
chr9_KI270720v1_random 3260
chr10 31807757
chr11 34071368
chr11_KI270721v1_random 1985
chr12 32527594
chr13 19466057
chr14 21574966
chr14_GL000009v2_random 12267
chr14_GL000194v1_random 10731
chr14_GL000225v1_random 54419
chr14_KI270722v1_random 13278
chr14_KI270723v1_random 4075
chr14_KI270724v1_random 3119
chr14_KI270725v1_random 6276
chr14_KI270726v1_random 1824
chr15 19290289
chr15_KI270727v1_random 1521
chr16 21475250
chr16_KI270728v1_random 5190
chr17 24823743
chr17_GL000205v2_random 66069
chr17_KI270729v1_random 18098
chr17_KI270730v1_random 4383
chr18 16105513
chr19 23157429
chr20 16070977
chr21 7861366
chr22 10769907
chr22_KI270731v1_random 615
chr22_KI270732v1_random 3949
chr22_KI270733v1_random 62061
chr22_KI270734v1_random 1421
chr22_KI270735v1_random 6326
chr22_KI270736v1_random 13860
chr22_KI270737v1_random 1717
chr22_KI270738v1_random 4653
chr22_KI270739v1_random 64
chrM 4759371
chrUn_GL000195v1 38710
chrUn_GL000213v1 442
chrUn_GL000214v1 3206
chrUn_GL000216v2 18594
chrUn_GL000218v1 8688
chrUn_GL000219v1 29005
chrUn_GL000220v1 13330
chrUn_GL000224v1 18121
chrUn_GL000226v1 10
chrUn_KI270302v1 64
chrUn_KI270303v1 60
chrUn_KI270304v1 55
chrUn_KI270305v1 15
chrUn_KI270310v1 160
chrUn_KI270311v1 88
chrUn_KI270312v1 2
chrUn_KI270315v1 10
chrUn_KI270316v1 1
chrUn_KI270317v1 10
chrUn_KI270320v1 130
chrUn_KI270322v1 119
chrUn_KI270330v1 655
chrUn_KI270333v1 253
chrUn_KI270336v1 169
chrUn_KI270337v1 400
chrUn_KI270362v1 46
chrUn_KI270363v1 46
chrUn_KI270364v1 3
chrUn_KI270366v1 35
chrUn_KI270374v1 1
chrUn_KI270378v1 8
chrUn_KI270381v1 1
chrUn_KI270382v1 23
chrUn_KI270383v1 1
chrUn_KI270384v1 8
chrUn_KI270385v1 6
chrUn_KI270386v1 2
chrUn_KI270388v1 2
chrUn_KI270389v1 5
chrUn_KI270390v1 1
chrUn_KI270392v1 2
chrUn_KI270393v1 5
chrUn_KI270394v1 5
chrUn_KI270395v1 8
chrUn_KI270396v1 1
chrUn_KI270411v1 32
chrUn_KI270412v1 14
chrUn_KI270414v1 24
chrUn_KI270417v1 124
chrUn_KI270418v1 80
chrUn_KI270419v1 25
chrUn_KI270420v1 112
chrUn_KI270422v1 55
chrUn_KI270423v1 13
chrUn_KI270424v1 8
chrUn_KI270425v1 6
chrUn_KI270429v1 415
chrUn_KI270435v1 5703
chrUn_KI270438v1 100831
chrUn_KI270442v1 46109
chrUn_KI270448v1 799
chrUn_KI270465v1 55
chrUn_KI270466v1 3422
chrUn_KI270467v1 10078
chrUn_KI270468v1 372
chrUn_KI270507v1 767
chrUn_KI270508v1 382
chrUn_KI270509v1 398
chrUn_KI270510v1 237
chrUn_KI270511v1 731
chrUn_KI270512v1 1274
chrUn_KI270515v1 1017
chrUn_KI270516v1 209
chrUn_KI270517v1 536
chrUn_KI270518v1 265
chrUn_KI270519v1 8911
chrUn_KI270521v1 367
chrUn_KI270522v1 181
chrUn_KI270528v1 4
chrUn_KI270529v1 18
chrUn_KI270530v1 17
chrUn_KI270538v1 6724
chrUn_KI270539v1 53
chrUn_KI270544v1 26
chrUn_KI270579v1 54
chrUn_KI270580v1 239
chrUn_KI270581v1 10
chrUn_KI270582v1 73
chrUn_KI270583v1 273
chrUn_KI270584v1 809
chrUn_KI270587v1 31
chrUn_KI270588v1 910
chrUn_KI270589v1 984
chrUn_KI270590v1 740
chrUn_KI270591v1 1288
chrUn_KI270593v1 324
chrUn_KI270741v1 308
chrUn_KI270742v1 7429
chrUn_KI270743v1 5903
chrUn_KI270744v1 18351
chrUn_KI270745v1 553
chrUn_KI270746v1 7127
chrUn_KI270747v1 775
chrUn_KI270748v1 370
chrUn_KI270749v1 6014
chrUn_KI270750v1 10055
chrUn_KI270751v1 10473
chrUn_KI270753v1 1239
chrUn_KI270754v1 1736
chrUn_KI270755v1 596
chrUn_KI270756v1 1662
chrUn_KI270757v1 3637
chrX 22636034
chrY 111481
chrY_KI270740v1_random 65

Fragment lengths

fragments min max mean median
fragments 677695770 7 1992 243.53 180
global fragment-length histogram

Files

Filename Size md5
T45_b19_Skin_PCW17.fragments.tsv.gz 6.26 GB a568c8bc2a1fd1efad4a9263a899aef5
T45_b19_Skin_PCW17.fragments.tsv.gz.tbi 1.77 MB 2413bd76bf5109c8a83752d8964e9207
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 4c07a08058d3c55241150d177993579e
statistics/