Resource

Id summary/liu2026Multiomics/atac_fragments/T47_b4_Brain_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T47_b4_Brain_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 4
  • modalities: ATAC
  • organ: Brain
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T47_b4_Brain_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T47
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL30_E02+H04+A03, CL27_E11+H08+A01, CL30_E05+A10+E12, CL28_E05+F06+D03, CL28_E04+E03+A11 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 29]
n
191,994,710
mean
1.89
sd
1.69

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 191994710
chr1 16877547
chr1_KI270706v1_random 1572
chr1_KI270707v1_random 236
chr1_KI270708v1_random 493
chr1_KI270709v1_random 1091
chr1_KI270710v1_random 167
chr1_KI270711v1_random 608
chr1_KI270712v1_random 892
chr1_KI270713v1_random 6788
chr1_KI270714v1_random 1738
chr2 14912197
chr2_KI270715v1_random 17
chr2_KI270716v1_random 67
chr3 11765706
chr3_GL000221v1_random 277
chr4 9211105
chr4_GL000008v2_random 1928
chr5 10315595
chr5_GL000208v1_random 481
chr6 10296312
chr7 9926519
chr8 8749334
chr9 8086572
chr9_KI270717v1_random 107
chr9_KI270718v1_random 129
chr9_KI270719v1_random 1277
chr9_KI270720v1_random 420
chr10 8525983
chr11 10051276
chr11_KI270721v1_random 354
chr12 9058599
chr13 4950246
chr14 6088314
chr14_GL000009v2_random 1777
chr14_GL000194v1_random 1915
chr14_GL000225v1_random 7702
chr14_KI270722v1_random 1703
chr14_KI270723v1_random 696
chr14_KI270724v1_random 484
chr14_KI270725v1_random 865
chr14_KI270726v1_random 208
chr15 5511673
chr15_KI270727v1_random 216
chr16 6617191
chr16_KI270728v1_random 553
chr17 8233734
chr17_GL000205v2_random 14721
chr17_KI270729v1_random 1817
chr17_KI270730v1_random 511
chr18 4126991
chr19 8147522
chr20 4791369
chr21 2067279
chr22 3949259
chr22_KI270731v1_random 146
chr22_KI270732v1_random 590
chr22_KI270733v1_random 13682
chr22_KI270734v1_random 409
chr22_KI270735v1_random 822
chr22_KI270736v1_random 2011
chr22_KI270737v1_random 217
chr22_KI270738v1_random 451
chr22_KI270739v1_random 10
chrM 4234265
chrUn_GL000195v1 14817
chrUn_GL000213v1 54
chrUn_GL000214v1 531
chrUn_GL000216v2 2418
chrUn_GL000218v1 1314
chrUn_GL000219v1 5891
chrUn_GL000220v1 2942
chrUn_GL000224v1 2476
chrUn_GL000226v1 1
chrUn_KI270302v1 5
chrUn_KI270303v1 8
chrUn_KI270304v1 10
chrUn_KI270305v1 3
chrUn_KI270310v1 23
chrUn_KI270311v1 2
chrUn_KI270320v1 12
chrUn_KI270322v1 20
chrUn_KI270330v1 81
chrUn_KI270333v1 30
chrUn_KI270336v1 20
chrUn_KI270337v1 55
chrUn_KI270362v1 7
chrUn_KI270363v1 7
chrUn_KI270366v1 3
chrUn_KI270385v1 3
chrUn_KI270388v1 2
chrUn_KI270390v1 2
chrUn_KI270391v1 1
chrUn_KI270392v1 4
chrUn_KI270393v1 1
chrUn_KI270394v1 1
chrUn_KI270411v1 5
chrUn_KI270412v1 4
chrUn_KI270414v1 2
chrUn_KI270417v1 13
chrUn_KI270418v1 4
chrUn_KI270419v1 2
chrUn_KI270420v1 5
chrUn_KI270422v1 6
chrUn_KI270423v1 3
chrUn_KI270429v1 59
chrUn_KI270435v1 608
chrUn_KI270438v1 10089
chrUn_KI270442v1 6067
chrUn_KI270448v1 96
chrUn_KI270465v1 7
chrUn_KI270466v1 401
chrUn_KI270467v1 1206
chrUn_KI270468v1 40
chrUn_KI270507v1 64
chrUn_KI270508v1 30
chrUn_KI270509v1 37
chrUn_KI270510v1 23
chrUn_KI270511v1 46
chrUn_KI270512v1 128
chrUn_KI270515v1 72
chrUn_KI270516v1 12
chrUn_KI270517v1 51
chrUn_KI270518v1 33
chrUn_KI270519v1 880
chrUn_KI270521v1 45
chrUn_KI270522v1 19
chrUn_KI270529v1 1
chrUn_KI270530v1 3
chrUn_KI270538v1 720
chrUn_KI270539v1 9
chrUn_KI270579v1 9
chrUn_KI270580v1 38
chrUn_KI270581v1 3
chrUn_KI270582v1 11
chrUn_KI270583v1 33
chrUn_KI270584v1 90
chrUn_KI270587v1 17
chrUn_KI270588v1 83
chrUn_KI270589v1 122
chrUn_KI270590v1 61
chrUn_KI270591v1 129
chrUn_KI270593v1 38
chrUn_KI270741v1 28
chrUn_KI270742v1 1115
chrUn_KI270743v1 969
chrUn_KI270744v1 2518
chrUn_KI270745v1 121
chrUn_KI270746v1 852
chrUn_KI270747v1 116
chrUn_KI270748v1 76
chrUn_KI270749v1 916
chrUn_KI270750v1 1422
chrUn_KI270751v1 1177
chrUn_KI270753v1 211
chrUn_KI270754v1 360
chrUn_KI270755v1 98
chrUn_KI270756v1 194
chrUn_KI270757v1 448
chrX 5336708
chrY 30468
chrY_KI270740v1_random 9

Fragment lengths

fragments min max mean median
fragments 191994710 7 1992 252.56 184
global fragment-length histogram

Files

Filename Size md5
T47_b4_Brain_PCW17.fragments.tsv.gz 1.69 GB bbb8a5ab78589b3038d2a99ded65f98f
T47_b4_Brain_PCW17.fragments.tsv.gz.tbi 995.4 KB 24efece40f1cd33bcb5ca9146035ffbc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 9ed45b5c601c1b3a19d171e5aa4fcd69
statistics/