Resource

Id summary/liu2026Multiomics/atac_fragments/T49_b18_Lung_PCW20content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T49_b18_Lung_PCW20 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 18
  • modalities: ATAC
  • organ: Lung
  • pcw_age: 20
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T49_b18_Lung_PCW20
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T49
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL134_C06+C07+A10, CL135_C06+H08+G07, CL140_C05+F08+G06, CL133_C01+B12+D12, CL136_C05+C08+G07 (top 5 of 884717 values)
count int

count
HISTOGRAM FOR count [1, 24]
n
411,206,105
mean
1.95
sd
1.53

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 411206105
chr1 37006848
chr1_KI270706v1_random 2141
chr1_KI270707v1_random 385
chr1_KI270708v1_random 245
chr1_KI270709v1_random 2105
chr1_KI270710v1_random 108
chr1_KI270711v1_random 1099
chr1_KI270712v1_random 1332
chr1_KI270713v1_random 17817
chr1_KI270714v1_random 3901
chr2 31781703
chr2_KI270715v1_random 157
chr2_KI270716v1_random 216
chr3 26017103
chr3_GL000221v1_random 532
chr4 19919880
chr4_GL000008v2_random 3910
chr5 21446345
chr5_GL000208v1_random 1657
chr6 23421179
chr7 20986716
chr8 17619642
chr9 17553889
chr9_KI270717v1_random 274
chr9_KI270718v1_random 273
chr9_KI270719v1_random 2599
chr9_KI270720v1_random 941
chr10 18849797
chr11 21731054
chr11_KI270721v1_random 1504
chr12 19786548
chr13 10663718
chr14 13303383
chr14_GL000009v2_random 2372
chr14_GL000194v1_random 4687
chr14_GL000225v1_random 6256
chr14_KI270722v1_random 1807
chr14_KI270723v1_random 870
chr14_KI270724v1_random 427
chr14_KI270725v1_random 1144
chr14_KI270726v1_random 529
chr15 12228628
chr15_KI270727v1_random 441
chr16 14663105
chr16_KI270728v1_random 1241
chr17 19410955
chr17_GL000205v2_random 22972
chr17_KI270729v1_random 3995
chr17_KI270730v1_random 1097
chr18 8978522
chr19 19131559
chr20 10167009
chr21 4734066
chr22 8153900
chr22_KI270731v1_random 337
chr22_KI270732v1_random 1479
chr22_KI270733v1_random 91920
chr22_KI270734v1_random 1095
chr22_KI270735v1_random 1663
chr22_KI270736v1_random 4883
chr22_KI270737v1_random 386
chr22_KI270738v1_random 1040
chr22_KI270739v1_random 16
chrM 4093717
chrUn_GL000195v1 23876
chrUn_GL000213v1 170
chrUn_GL000214v1 858
chrUn_GL000216v2 1831
chrUn_GL000218v1 3364
chrUn_GL000219v1 14959
chrUn_GL000220v1 7341
chrUn_GL000224v1 4581
chrUn_GL000226v1 18
chrUn_KI270302v1 3
chrUn_KI270303v1 5
chrUn_KI270304v1 5
chrUn_KI270305v1 5
chrUn_KI270310v1 19
chrUn_KI270311v1 11
chrUn_KI270315v1 6
chrUn_KI270316v1 1
chrUn_KI270317v1 2
chrUn_KI270320v1 51
chrUn_KI270322v1 34
chrUn_KI270329v1 1
chrUn_KI270330v1 175
chrUn_KI270333v1 94
chrUn_KI270336v1 59
chrUn_KI270337v1 159
chrUn_KI270362v1 7
chrUn_KI270363v1 10
chrUn_KI270366v1 14
chrUn_KI270378v1 1
chrUn_KI270381v1 1
chrUn_KI270382v1 6
chrUn_KI270384v1 6
chrUn_KI270385v1 3
chrUn_KI270387v1 1
chrUn_KI270389v1 1
chrUn_KI270390v1 2
chrUn_KI270393v1 4
chrUn_KI270394v1 2
chrUn_KI270395v1 1
chrUn_KI270396v1 1
chrUn_KI270411v1 12
chrUn_KI270412v1 1
chrUn_KI270414v1 6
chrUn_KI270417v1 41
chrUn_KI270418v1 15
chrUn_KI270419v1 3
chrUn_KI270420v1 24
chrUn_KI270422v1 30
chrUn_KI270423v1 11
chrUn_KI270424v1 6
chrUn_KI270425v1 5
chrUn_KI270429v1 58
chrUn_KI270435v1 1520
chrUn_KI270438v1 11364
chrUn_KI270442v1 11424
chrUn_KI270448v1 222
chrUn_KI270465v1 17
chrUn_KI270466v1 1154
chrUn_KI270467v1 3473
chrUn_KI270468v1 123
chrUn_KI270507v1 184
chrUn_KI270508v1 105
chrUn_KI270509v1 88
chrUn_KI270510v1 47
chrUn_KI270511v1 148
chrUn_KI270512v1 291
chrUn_KI270515v1 213
chrUn_KI270516v1 52
chrUn_KI270517v1 140
chrUn_KI270518v1 75
chrUn_KI270519v1 2566
chrUn_KI270521v1 101
chrUn_KI270522v1 37
chrUn_KI270528v1 1
chrUn_KI270529v1 7
chrUn_KI270530v1 8
chrUn_KI270538v1 1911
chrUn_KI270539v1 7
chrUn_KI270544v1 5
chrUn_KI270579v1 8
chrUn_KI270580v1 70
chrUn_KI270581v1 6
chrUn_KI270582v1 16
chrUn_KI270583v1 72
chrUn_KI270584v1 180
chrUn_KI270587v1 24
chrUn_KI270588v1 222
chrUn_KI270589v1 279
chrUn_KI270590v1 170
chrUn_KI270591v1 314
chrUn_KI270593v1 82
chrUn_KI270741v1 69
chrUn_KI270742v1 1782
chrUn_KI270743v1 2093
chrUn_KI270744v1 4009
chrUn_KI270745v1 232
chrUn_KI270746v1 2347
chrUn_KI270747v1 280
chrUn_KI270748v1 140
chrUn_KI270749v1 1534
chrUn_KI270750v1 2585
chrUn_KI270751v1 2216
chrUn_KI270753v1 275
chrUn_KI270754v1 749
chrUn_KI270755v1 277
chrUn_KI270756v1 527
chrUn_KI270757v1 940
chrX 8790477
chrY 459497
chrY_KI270740v1_random 331

Fragment lengths

fragments min max mean median
fragments 411206105 7 1992 275.48 206
global fragment-length histogram

Files

Filename Size md5
T49_b18_Lung_PCW20.fragments.tsv.gz 3.66 GB 14940c7629fdc189c4d52e2e87b86a47
T49_b18_Lung_PCW20.fragments.tsv.gz.tbi 1.48 MB 77972a1eda8e30652aeae8d39491aa26
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 93a9de212af2dc2b6d898a963d3ef3d6
statistics/