Resource

Id summary/liu2026Multiomics/atac_fragments/T51_b13_Eye_PCW20content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T51_b13_Eye_PCW20 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 20
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T51_b13_Eye_PCW20
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T51
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL95_D05+D06+C02, CL94_D02+A06+H04, CL92_D05+H07+D10, CL95_D05+A10+D02, CL92_D07+B03+A04 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 21]
n
269,908,256
mean
1.68
sd
1.19

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 269908256
chr1 22964362
chr1_KI270706v1_random 2494
chr1_KI270707v1_random 502
chr1_KI270708v1_random 140
chr1_KI270709v1_random 3044
chr1_KI270710v1_random 160
chr1_KI270711v1_random 1185
chr1_KI270712v1_random 1128
chr1_KI270713v1_random 6241
chr1_KI270714v1_random 2633
chr2 21700841
chr2_KI270715v1_random 154
chr2_KI270716v1_random 353
chr3 17820318
chr3_GL000221v1_random 662
chr4 15769392
chr4_GL000008v2_random 5340
chr5 15446271
chr5_GL000208v1_random 1976
chr6 15388667
chr7 14470790
chr8 12739456
chr9 11243737
chr9_KI270717v1_random 219
chr9_KI270718v1_random 373
chr9_KI270719v1_random 3235
chr9_KI270720v1_random 1224
chr10 12283585
chr11 14105702
chr11_KI270721v1_random 408
chr12 13104801
chr13 8121195
chr14 8844060
chr14_GL000009v2_random 3131
chr14_GL000194v1_random 5288
chr14_GL000225v1_random 10251
chr14_KI270722v1_random 2184
chr14_KI270723v1_random 1196
chr14_KI270724v1_random 528
chr14_KI270725v1_random 1564
chr14_KI270726v1_random 542
chr15 7738451
chr15_KI270727v1_random 502
chr16 8694262
chr16_KI270728v1_random 1008
chr17 10365175
chr17_GL000205v2_random 16092
chr17_KI270729v1_random 6852
chr17_KI270730v1_random 1712
chr18 6744905
chr19 9039718
chr20 6544217
chr21 3153454
chr22 4560370
chr22_KI270731v1_random 155
chr22_KI270732v1_random 1849
chr22_KI270733v1_random 27950
chr22_KI270734v1_random 615
chr22_KI270735v1_random 2307
chr22_KI270736v1_random 8201
chr22_KI270737v1_random 630
chr22_KI270738v1_random 1911
chr22_KI270739v1_random 28
chrM 1915637
chrUn_GL000195v1 10857
chrUn_GL000213v1 184
chrUn_GL000214v1 1220
chrUn_GL000216v2 2731
chrUn_GL000218v1 4259
chrUn_GL000219v1 9206
chrUn_GL000220v1 4040
chrUn_GL000224v1 6456
chrUn_GL000226v1 18
chrUn_KI270302v1 13
chrUn_KI270303v1 5
chrUn_KI270304v1 10
chrUn_KI270305v1 11
chrUn_KI270310v1 21
chrUn_KI270311v1 8
chrUn_KI270312v1 1
chrUn_KI270315v1 2
chrUn_KI270316v1 2
chrUn_KI270317v1 1
chrUn_KI270320v1 89
chrUn_KI270322v1 52
chrUn_KI270329v1 1
chrUn_KI270330v1 178
chrUn_KI270333v1 128
chrUn_KI270336v1 51
chrUn_KI270337v1 166
chrUn_KI270362v1 39
chrUn_KI270363v1 18
chrUn_KI270364v1 1
chrUn_KI270366v1 24
chrUn_KI270378v1 1
chrUn_KI270382v1 9
chrUn_KI270383v1 1
chrUn_KI270384v1 2
chrUn_KI270385v1 3
chrUn_KI270388v1 4
chrUn_KI270389v1 1
chrUn_KI270390v1 2
chrUn_KI270392v1 1
chrUn_KI270393v1 2
chrUn_KI270394v1 1
chrUn_KI270395v1 1
chrUn_KI270396v1 3
chrUn_KI270411v1 15
chrUn_KI270412v1 7
chrUn_KI270414v1 14
chrUn_KI270417v1 54
chrUn_KI270418v1 21
chrUn_KI270419v1 5
chrUn_KI270420v1 43
chrUn_KI270422v1 51
chrUn_KI270423v1 9
chrUn_KI270424v1 3
chrUn_KI270425v1 1
chrUn_KI270429v1 100
chrUn_KI270435v1 2263
chrUn_KI270438v1 23338
chrUn_KI270442v1 16174
chrUn_KI270448v1 338
chrUn_KI270465v1 34
chrUn_KI270466v1 1317
chrUn_KI270467v1 4011
chrUn_KI270468v1 193
chrUn_KI270507v1 328
chrUn_KI270508v1 137
chrUn_KI270509v1 110
chrUn_KI270510v1 72
chrUn_KI270511v1 286
chrUn_KI270512v1 460
chrUn_KI270515v1 337
chrUn_KI270516v1 74
chrUn_KI270517v1 179
chrUn_KI270518v1 89
chrUn_KI270519v1 3410
chrUn_KI270521v1 148
chrUn_KI270522v1 60
chrUn_KI270528v1 1
chrUn_KI270529v1 9
chrUn_KI270530v1 10
chrUn_KI270538v1 2182
chrUn_KI270539v1 8
chrUn_KI270544v1 7
chrUn_KI270579v1 21
chrUn_KI270580v1 94
chrUn_KI270581v1 3
chrUn_KI270582v1 37
chrUn_KI270583v1 107
chrUn_KI270584v1 255
chrUn_KI270587v1 158
chrUn_KI270588v1 301
chrUn_KI270589v1 382
chrUn_KI270590v1 233
chrUn_KI270591v1 438
chrUn_KI270593v1 87
chrUn_KI270741v1 70
chrUn_KI270742v1 2283
chrUn_KI270743v1 2974
chrUn_KI270744v1 5564
chrUn_KI270745v1 259
chrUn_KI270746v1 2723
chrUn_KI270747v1 327
chrUn_KI270748v1 160
chrUn_KI270749v1 1959
chrUn_KI270750v1 3400
chrUn_KI270751v1 2977
chrUn_KI270753v1 393
chrUn_KI270754v1 1066
chrUn_KI270755v1 202
chrUn_KI270756v1 802
chrUn_KI270757v1 1361
chrX 6551221
chrY 347103
chrY_KI270740v1_random 242

Fragment lengths

fragments min max mean median
fragments 269908256 7 1992 294.05 223
global fragment-length histogram

Files

Filename Size md5
T51_b13_Eye_PCW20.fragments.tsv.gz 2.62 GB 20bad7c82f96353665d53fe0244f849a
T51_b13_Eye_PCW20.fragments.tsv.gz.tbi 1.25 MB 2402af395cd77fac4617e9f08ad3093e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 3395add600d8f11729848771767346b6
statistics/