Resource

Id summary/liu2026Multiomics/atac_fragments/T5_b13_Eye_PCW19content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T5_b13_Eye_PCW19 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 19
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T5_b13_Eye_PCW19
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T5
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL93_C07+H07+A02, CL91_C06+D04+H12, CL96_C04+F03+F09, CL92_C02+D03+B01, CL91_C07+B06+F03 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 22]
n
419,117,789
mean
1.67
sd
1.18

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 419117789
chr1 34302180
chr1_KI270706v1_random 4942
chr1_KI270707v1_random 1016
chr1_KI270708v1_random 385
chr1_KI270709v1_random 5302
chr1_KI270710v1_random 319
chr1_KI270711v1_random 2852
chr1_KI270712v1_random 2156
chr1_KI270713v1_random 7724
chr1_KI270714v1_random 4705
chr2 33165401
chr2_KI270715v1_random 280
chr2_KI270716v1_random 701
chr3 27591019
chr3_GL000221v1_random 1129
chr4 24783562
chr4_GL000008v2_random 9525
chr5 24198164
chr5_GL000208v1_random 3497
chr6 23810453
chr7 22332250
chr8 20018981
chr9 17194416
chr9_KI270717v1_random 300
chr9_KI270718v1_random 613
chr9_KI270719v1_random 5424
chr9_KI270720v1_random 2292
chr10 19128646
chr11 21203585
chr11_KI270721v1_random 619
chr12 19999791
chr13 13026481
chr14 13476722
chr14_GL000009v2_random 7174
chr14_GL000194v1_random 6986
chr14_GL000225v1_random 17827
chr14_KI270722v1_random 7513
chr14_KI270723v1_random 2541
chr14_KI270724v1_random 1260
chr14_KI270725v1_random 2842
chr14_KI270726v1_random 88
chr15 11925404
chr15_KI270727v1_random 756
chr16 13035185
chr16_KI270728v1_random 4537
chr17 15054288
chr17_GL000205v2_random 32093
chr17_KI270729v1_random 12406
chr17_KI270730v1_random 2869
chr18 10825619
chr19 12577241
chr20 10141932
chr21 5172038
chr22 6832486
chr22_KI270731v1_random 506
chr22_KI270732v1_random 3476
chr22_KI270733v1_random 36277
chr22_KI270734v1_random 826
chr22_KI270735v1_random 4476
chr22_KI270736v1_random 8796
chr22_KI270737v1_random 1079
chr22_KI270738v1_random 3218
chr22_KI270739v1_random 175
chrM 4371590
chrUn_GL000195v1 14839
chrUn_GL000213v1 294
chrUn_GL000214v1 2421
chrUn_GL000216v2 6020
chrUn_GL000218v1 9808
chrUn_GL000219v1 14897
chrUn_GL000220v1 6995
chrUn_GL000224v1 12256
chrUn_GL000226v1 35
chrUn_KI270302v1 14
chrUn_KI270303v1 18
chrUn_KI270304v1 15
chrUn_KI270305v1 21
chrUn_KI270310v1 42
chrUn_KI270311v1 24
chrUn_KI270312v1 3
chrUn_KI270315v1 6
chrUn_KI270316v1 3
chrUn_KI270317v1 6
chrUn_KI270320v1 127
chrUn_KI270322v1 89
chrUn_KI270330v1 438
chrUn_KI270333v1 135
chrUn_KI270336v1 109
chrUn_KI270337v1 229
chrUn_KI270362v1 43
chrUn_KI270363v1 33
chrUn_KI270364v1 1
chrUn_KI270366v1 48
chrUn_KI270371v1 1
chrUn_KI270374v1 2
chrUn_KI270378v1 1
chrUn_KI270381v1 1
chrUn_KI270382v1 33
chrUn_KI270384v1 10
chrUn_KI270385v1 7
chrUn_KI270386v1 5
chrUn_KI270387v1 1
chrUn_KI270388v1 1
chrUn_KI270389v1 10
chrUn_KI270390v1 2
chrUn_KI270392v1 11
chrUn_KI270393v1 6
chrUn_KI270394v1 6
chrUn_KI270396v1 2
chrUn_KI270411v1 16
chrUn_KI270412v1 21
chrUn_KI270414v1 15
chrUn_KI270417v1 134
chrUn_KI270418v1 31
chrUn_KI270419v1 14
chrUn_KI270420v1 53
chrUn_KI270422v1 80
chrUn_KI270423v1 19
chrUn_KI270424v1 3
chrUn_KI270425v1 2
chrUn_KI270429v1 278
chrUn_KI270435v1 4081
chrUn_KI270438v1 37308
chrUn_KI270442v1 28238
chrUn_KI270448v1 607
chrUn_KI270465v1 111
chrUn_KI270466v1 2514
chrUn_KI270467v1 7396
chrUn_KI270468v1 316
chrUn_KI270507v1 574
chrUn_KI270508v1 277
chrUn_KI270509v1 219
chrUn_KI270510v1 160
chrUn_KI270511v1 466
chrUn_KI270512v1 725
chrUn_KI270515v1 646
chrUn_KI270516v1 118
chrUn_KI270517v1 312
chrUn_KI270518v1 187
chrUn_KI270519v1 5835
chrUn_KI270521v1 270
chrUn_KI270522v1 127
chrUn_KI270528v1 4
chrUn_KI270529v1 13
chrUn_KI270530v1 19
chrUn_KI270538v1 5071
chrUn_KI270539v1 58
chrUn_KI270544v1 17
chrUn_KI270579v1 35
chrUn_KI270580v1 176
chrUn_KI270581v1 5
chrUn_KI270582v1 63
chrUn_KI270583v1 166
chrUn_KI270584v1 452
chrUn_KI270587v1 170
chrUn_KI270588v1 641
chrUn_KI270589v1 643
chrUn_KI270590v1 471
chrUn_KI270591v1 838
chrUn_KI270593v1 166
chrUn_KI270741v1 192
chrUn_KI270742v1 4923
chrUn_KI270743v1 5624
chrUn_KI270744v1 10239
chrUn_KI270745v1 588
chrUn_KI270746v1 6149
chrUn_KI270747v1 679
chrUn_KI270748v1 86
chrUn_KI270749v1 3928
chrUn_KI270750v1 5950
chrUn_KI270751v1 7298
chrUn_KI270752v1 1
chrUn_KI270753v1 615
chrUn_KI270754v1 2081
chrUn_KI270755v1 551
chrUn_KI270756v1 1338
chrUn_KI270757v1 2528
chrX 14465796
chrY 51039
chrY_KI270740v1_random 19

Fragment lengths

fragments min max mean median
fragments 419117789 7 1992 291.01 221
global fragment-length histogram

Files

Filename Size md5
T5_b13_Eye_PCW19.fragments.tsv.gz 4.0 GB 564e372b3a9030e1c8fa936cc285bbf1
T5_b13_Eye_PCW19.fragments.tsv.gz.tbi 1.38 MB bc18d014252e1d6a48f6d2e2e1bcb7ab
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 5e0ef285b041432d60f41821306aa9bd
statistics/