Resource

Id summary/liu2026Multiomics/atac_fragments/T71_b15_Liver_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T71_b15_Liver_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 15
  • modalities: ATAC
  • organ: Liver
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T71_b15_Liver_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T71
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL112_F10+E11+G11, CL110_F10+C11+D12, CL111_F03+A03+E03, CL108_F06+F05+E04, CL114_F04+C03+H03 (top 5 of 1105415 values)
count int

count
HISTOGRAM FOR count [1, 44]
n
286,615,074
mean
2.62
sd
2.75

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 286615074
chr1 27248375
chr1_KI270706v1_random 2288
chr1_KI270707v1_random 292
chr1_KI270708v1_random 835
chr1_KI270709v1_random 2133
chr1_KI270710v1_random 271
chr1_KI270711v1_random 1400
chr1_KI270712v1_random 884
chr1_KI270713v1_random 15204
chr1_KI270714v1_random 2627
chr2 21427298
chr2_KI270715v1_random 99
chr2_KI270716v1_random 212
chr3 18306423
chr3_GL000221v1_random 424
chr4 13058313
chr4_GL000008v2_random 3299
chr5 14549787
chr5_GL000208v1_random 1105
chr6 16224778
chr7 14411625
chr8 11887993
chr9 11914646
chr9_KI270717v1_random 182
chr9_KI270718v1_random 202
chr9_KI270719v1_random 2008
chr9_KI270720v1_random 799
chr10 12418975
chr11 14961175
chr11_KI270721v1_random 1382
chr12 13828744
chr13 6693680
chr14 9356242
chr14_GL000009v2_random 1805
chr14_GL000194v1_random 2798
chr14_GL000225v1_random 8834
chr14_KI270722v1_random 1070
chr14_KI270723v1_random 641
chr14_KI270724v1_random 544
chr14_KI270725v1_random 1775
chr14_KI270726v1_random 91
chr15 8321926
chr15_KI270727v1_random 645
chr16 10507556
chr16_KI270728v1_random 922
chr17 13364338
chr17_GL000205v2_random 27436
chr17_KI270729v1_random 3345
chr17_KI270730v1_random 892
chr18 5515826
chr19 14393746
chr20 7103971
chr21 3074633
chr22 6101046
chr22_KI270731v1_random 328
chr22_KI270732v1_random 1058
chr22_KI270733v1_random 69826
chr22_KI270734v1_random 1087
chr22_KI270735v1_random 1620
chr22_KI270736v1_random 2784
chr22_KI270737v1_random 385
chr22_KI270738v1_random 1015
chr22_KI270739v1_random 24
chrM 4081907
chrUn_GL000195v1 31481
chrUn_GL000213v1 26
chrUn_GL000214v1 924
chrUn_GL000216v2 3745
chrUn_GL000218v1 2615
chrUn_GL000219v1 18125
chrUn_GL000220v1 7520
chrUn_GL000224v1 4564
chrUn_GL000226v1 4
chrUn_KI270302v1 11
chrUn_KI270303v1 4
chrUn_KI270304v1 9
chrUn_KI270305v1 3
chrUn_KI270310v1 30
chrUn_KI270311v1 14
chrUn_KI270312v1 3
chrUn_KI270315v1 4
chrUn_KI270316v1 1
chrUn_KI270317v1 4
chrUn_KI270320v1 21
chrUn_KI270322v1 26
chrUn_KI270330v1 148
chrUn_KI270333v1 181
chrUn_KI270336v1 88
chrUn_KI270337v1 259
chrUn_KI270362v1 13
chrUn_KI270363v1 12
chrUn_KI270366v1 7
chrUn_KI270378v1 2
chrUn_KI270382v1 15
chrUn_KI270384v1 6
chrUn_KI270385v1 5
chrUn_KI270386v1 1
chrUn_KI270388v1 3
chrUn_KI270389v1 1
chrUn_KI270390v1 2
chrUn_KI270391v1 2
chrUn_KI270392v1 3
chrUn_KI270393v1 11
chrUn_KI270394v1 5
chrUn_KI270395v1 8
chrUn_KI270396v1 2
chrUn_KI270411v1 11
chrUn_KI270412v1 3
chrUn_KI270414v1 4
chrUn_KI270417v1 33
chrUn_KI270418v1 4
chrUn_KI270419v1 1
chrUn_KI270420v1 19
chrUn_KI270422v1 21
chrUn_KI270423v1 6
chrUn_KI270424v1 2
chrUn_KI270425v1 2
chrUn_KI270429v1 54
chrUn_KI270435v1 1266
chrUn_KI270438v1 12529
chrUn_KI270442v1 9611
chrUn_KI270448v1 183
chrUn_KI270465v1 12
chrUn_KI270466v1 1478
chrUn_KI270467v1 4086
chrUn_KI270468v1 96
chrUn_KI270507v1 203
chrUn_KI270508v1 116
chrUn_KI270509v1 91
chrUn_KI270510v1 66
chrUn_KI270511v1 141
chrUn_KI270512v1 298
chrUn_KI270515v1 188
chrUn_KI270516v1 49
chrUn_KI270517v1 120
chrUn_KI270518v1 57
chrUn_KI270519v1 1910
chrUn_KI270521v1 79
chrUn_KI270522v1 42
chrUn_KI270528v1 3
chrUn_KI270529v1 1
chrUn_KI270530v1 14
chrUn_KI270538v1 1524
chrUn_KI270539v1 6
chrUn_KI270544v1 4
chrUn_KI270579v1 12
chrUn_KI270580v1 77
chrUn_KI270581v1 5
chrUn_KI270582v1 29
chrUn_KI270583v1 67
chrUn_KI270584v1 180
chrUn_KI270587v1 488
chrUn_KI270588v1 176
chrUn_KI270589v1 231
chrUn_KI270590v1 127
chrUn_KI270591v1 247
chrUn_KI270593v1 41
chrUn_KI270741v1 66
chrUn_KI270742v1 2052
chrUn_KI270743v1 1389
chrUn_KI270744v1 3856
chrUn_KI270745v1 187
chrUn_KI270746v1 2061
chrUn_KI270747v1 222
chrUn_KI270748v1 171
chrUn_KI270749v1 1848
chrUn_KI270750v1 2558
chrUn_KI270751v1 2659
chrUn_KI270752v1 6
chrUn_KI270753v1 288
chrUn_KI270754v1 471
chrUn_KI270755v1 179
chrUn_KI270756v1 496
chrUn_KI270757v1 791
chrX 7525273
chrY 46985
chrY_KI270740v1_random 21

Fragment lengths

fragments min max mean median
fragments 286615074 7 1992 185.78 118
global fragment-length histogram

Files

Filename Size md5
T71_b15_Liver_PCW18.fragments.tsv.gz 2.47 GB 1d703c31e9fd435be89f139b46040e19
T71_b15_Liver_PCW18.fragments.tsv.gz.tbi 1.14 MB 7e1746b4e407463c97436ae1aaf7996e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 0452d384088052de37e3bd24e3a34b36
statistics/