Resource

Id summary/liu2026Multiomics/atac_fragments/T79_b13_Eye_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T79_b13_Eye_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 13
  • modalities: ATAC
  • organ: Eye
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T79_b13_Eye_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T79
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL90_B06+G06+G09, CL96_B01+C05+E02, CL91_B01+A10+B04, CL94_B11+A01+F04, CL93_B07+D05+E05 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 35]
n
314,307,707
mean
1.66
sd
1.18

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 314307707
chr1 26192212
chr1_KI270706v1_random 4376
chr1_KI270707v1_random 782
chr1_KI270708v1_random 1887
chr1_KI270709v1_random 5991
chr1_KI270710v1_random 780
chr1_KI270711v1_random 1617
chr1_KI270712v1_random 1788
chr1_KI270713v1_random 6706
chr1_KI270714v1_random 2333
chr2 25428832
chr2_KI270715v1_random 264
chr2_KI270716v1_random 857
chr3 21121932
chr3_GL000221v1_random 750
chr4 19332106
chr4_GL000008v2_random 7756
chr5 18445108
chr5_GL000208v1_random 3746
chr6 18376150
chr7 16712479
chr8 14848466
chr9 12679407
chr9_KI270717v1_random 217
chr9_KI270718v1_random 349
chr9_KI270719v1_random 5126
chr9_KI270720v1_random 2095
chr10 14011963
chr11 15835858
chr11_KI270721v1_random 483
chr12 15043928
chr13 9626120
chr14 9837444
chr14_GL000009v2_random 4215
chr14_GL000194v1_random 4851
chr14_GL000225v1_random 15318
chr14_KI270722v1_random 2503
chr14_KI270723v1_random 1321
chr14_KI270724v1_random 1113
chr14_KI270725v1_random 4387
chr14_KI270726v1_random 62
chr15 8507996
chr15_KI270727v1_random 974
chr16 9379745
chr16_KI270728v1_random 1085
chr17 10746557
chr17_GL000205v2_random 20235
chr17_KI270729v1_random 15180
chr17_KI270730v1_random 3145
chr18 7701168
chr19 9283709
chr20 6965558
chr21 3609944
chr22 4657197
chr22_KI270731v1_random 182
chr22_KI270732v1_random 2898
chr22_KI270733v1_random 30049
chr22_KI270734v1_random 634
chr22_KI270735v1_random 4593
chr22_KI270736v1_random 7934
chr22_KI270737v1_random 1302
chr22_KI270738v1_random 3792
chr22_KI270739v1_random 56
chrM 3953485
chrUn_GL000195v1 13962
chrUn_GL000213v1 72
chrUn_GL000214v1 1580
chrUn_GL000216v2 10211
chrUn_GL000218v1 5508
chrUn_GL000219v1 14106
chrUn_GL000220v1 5270
chrUn_GL000224v1 8490
chrUn_GL000226v1 25
chrUn_KI270302v1 30
chrUn_KI270303v1 47
chrUn_KI270304v1 46
chrUn_KI270305v1 16
chrUn_KI270310v1 92
chrUn_KI270311v1 49
chrUn_KI270312v1 3
chrUn_KI270315v1 10
chrUn_KI270316v1 2
chrUn_KI270317v1 12
chrUn_KI270320v1 115
chrUn_KI270322v1 87
chrUn_KI270329v1 2
chrUn_KI270330v1 264
chrUn_KI270333v1 327
chrUn_KI270336v1 142
chrUn_KI270337v1 522
chrUn_KI270362v1 54
chrUn_KI270363v1 26
chrUn_KI270364v1 3
chrUn_KI270366v1 38
chrUn_KI270374v1 1
chrUn_KI270378v1 7
chrUn_KI270382v1 15
chrUn_KI270383v1 2
chrUn_KI270384v1 12
chrUn_KI270385v1 7
chrUn_KI270386v1 3
chrUn_KI270388v1 4
chrUn_KI270390v1 5
chrUn_KI270391v1 2
chrUn_KI270392v1 8
chrUn_KI270393v1 27
chrUn_KI270394v1 7
chrUn_KI270395v1 5
chrUn_KI270396v1 7
chrUn_KI270411v1 20
chrUn_KI270412v1 17
chrUn_KI270414v1 7
chrUn_KI270417v1 137
chrUn_KI270418v1 23
chrUn_KI270419v1 10
chrUn_KI270420v1 75
chrUn_KI270422v1 104
chrUn_KI270423v1 23
chrUn_KI270424v1 9
chrUn_KI270425v1 3
chrUn_KI270429v1 167
chrUn_KI270435v1 5096
chrUn_KI270438v1 66658
chrUn_KI270442v1 28564
chrUn_KI270448v1 689
chrUn_KI270465v1 64
chrUn_KI270466v1 3347
chrUn_KI270467v1 9351
chrUn_KI270468v1 388
chrUn_KI270507v1 675
chrUn_KI270508v1 269
chrUn_KI270509v1 366
chrUn_KI270510v1 208
chrUn_KI270511v1 567
chrUn_KI270512v1 878
chrUn_KI270515v1 799
chrUn_KI270516v1 178
chrUn_KI270517v1 430
chrUn_KI270518v1 289
chrUn_KI270519v1 6606
chrUn_KI270521v1 298
chrUn_KI270522v1 142
chrUn_KI270528v1 4
chrUn_KI270529v1 14
chrUn_KI270530v1 34
chrUn_KI270538v1 4918
chrUn_KI270539v1 11
chrUn_KI270544v1 27
chrUn_KI270579v1 29
chrUn_KI270580v1 218
chrUn_KI270581v1 7
chrUn_KI270582v1 64
chrUn_KI270583v1 218
chrUn_KI270584v1 634
chrUn_KI270587v1 2253
chrUn_KI270588v1 585
chrUn_KI270589v1 708
chrUn_KI270590v1 526
chrUn_KI270591v1 744
chrUn_KI270593v1 205
chrUn_KI270741v1 136
chrUn_KI270742v1 4080
chrUn_KI270743v1 3255
chrUn_KI270744v1 6149
chrUn_KI270745v1 262
chrUn_KI270746v1 5306
chrUn_KI270747v1 517
chrUn_KI270748v1 205
chrUn_KI270749v1 4766
chrUn_KI270750v1 6955
chrUn_KI270751v1 6904
chrUn_KI270753v1 640
chrUn_KI270754v1 756
chrUn_KI270755v1 309
chrUn_KI270756v1 2089
chrUn_KI270757v1 2917
chrX 11552684
chrY 39783
chrY_KI270740v1_random 19

Fragment lengths

fragments min max mean median
fragments 314307707 7 1992 286.18 214
global fragment-length histogram

Files

Filename Size md5
T79_b13_Eye_PCW18.fragments.tsv.gz 3.02 GB 8940236d218d07f7e7925fe9b2927f9f
T79_b13_Eye_PCW18.fragments.tsv.gz.tbi 1.32 MB 570c56f889f5c479a2d82962f16a6bd1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 9487fa0b88cb3424a817245c6f24db48
statistics/