Resource

Id summary/liu2026Multiomics/atac_fragments/T88_b17_Spleen_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T88_b17_Spleen_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Spleen
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T88_b17_Spleen_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T88
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL124_C08+B04+D08, CL120_C12+C02+A03, CL115_C10+F03+F03, CL122_C01+D12+A11, CL129_C05+H07+H08 (top 5 of 1763689 values)
count int

count
HISTOGRAM FOR count [1, 26]
n
448,397,887
mean
2.02
sd
1.62

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 448397887
chr1 40063029
chr1_KI270706v1_random 4007
chr1_KI270707v1_random 596
chr1_KI270708v1_random 1730
chr1_KI270709v1_random 3887
chr1_KI270710v1_random 607
chr1_KI270711v1_random 2093
chr1_KI270712v1_random 1892
chr1_KI270713v1_random 16279
chr1_KI270714v1_random 3061
chr2 34245120
chr2_KI270715v1_random 193
chr2_KI270716v1_random 402
chr3 27949742
chr3_GL000221v1_random 730
chr4 21054951
chr4_GL000008v2_random 5274
chr5 23097066
chr5_GL000208v1_random 2263
chr6 25059578
chr7 22231089
chr8 19018084
chr9 18530653
chr9_KI270717v1_random 393
chr9_KI270718v1_random 392
chr9_KI270719v1_random 4526
chr9_KI270720v1_random 1857
chr10 20615820
chr11 23160110
chr11_KI270721v1_random 1361
chr12 21646711
chr13 11358927
chr14 14687200
chr14_GL000009v2_random 3892
chr14_GL000194v1_random 5690
chr14_GL000225v1_random 14807
chr14_KI270722v1_random 2224
chr14_KI270723v1_random 1260
chr14_KI270724v1_random 1162
chr14_KI270725v1_random 3754
chr14_KI270726v1_random 621
chr15 13700769
chr15_KI270727v1_random 1149
chr16 16144625
chr16_KI270728v1_random 1851
chr17 21166770
chr17_GL000205v2_random 35218
chr17_KI270729v1_random 5852
chr17_KI270730v1_random 1481
chr18 9318338
chr19 20950668
chr20 11643376
chr21 5215407
chr22 9435789
chr22_KI270731v1_random 459
chr22_KI270732v1_random 2218
chr22_KI270733v1_random 93983
chr22_KI270734v1_random 1071
chr22_KI270735v1_random 3441
chr22_KI270736v1_random 4908
chr22_KI270737v1_random 713
chr22_KI270738v1_random 2087
chr22_KI270739v1_random 25
chrM 4547634
chrUn_GL000195v1 31252
chrUn_GL000213v1 74
chrUn_GL000214v1 1884
chrUn_GL000216v2 5768
chrUn_GL000218v1 5312
chrUn_GL000219v1 29056
chrUn_GL000220v1 13992
chrUn_GL000224v1 9185
chrUn_GL000226v1 16
chrUn_KI270302v1 16
chrUn_KI270303v1 30
chrUn_KI270304v1 22
chrUn_KI270305v1 10
chrUn_KI270310v1 54
chrUn_KI270311v1 23
chrUn_KI270312v1 4
chrUn_KI270315v1 4
chrUn_KI270316v1 4
chrUn_KI270317v1 6
chrUn_KI270320v1 75
chrUn_KI270322v1 36
chrUn_KI270330v1 270
chrUn_KI270333v1 180
chrUn_KI270336v1 83
chrUn_KI270337v1 256
chrUn_KI270362v1 28
chrUn_KI270363v1 30
chrUn_KI270364v1 2
chrUn_KI270366v1 19
chrUn_KI270374v1 1
chrUn_KI270378v1 7
chrUn_KI270382v1 23
chrUn_KI270383v1 2
chrUn_KI270384v1 3
chrUn_KI270385v1 3
chrUn_KI270386v1 9
chrUn_KI270388v1 2
chrUn_KI270390v1 3
chrUn_KI270391v1 2
chrUn_KI270392v1 5
chrUn_KI270393v1 13
chrUn_KI270394v1 2
chrUn_KI270395v1 10
chrUn_KI270396v1 6
chrUn_KI270411v1 9
chrUn_KI270412v1 8
chrUn_KI270414v1 2
chrUn_KI270417v1 59
chrUn_KI270418v1 14
chrUn_KI270419v1 4
chrUn_KI270420v1 36
chrUn_KI270422v1 49
chrUn_KI270423v1 14
chrUn_KI270424v1 5
chrUn_KI270425v1 2
chrUn_KI270429v1 118
chrUn_KI270435v1 2807
chrUn_KI270438v1 22572
chrUn_KI270442v1 20096
chrUn_KI270448v1 400
chrUn_KI270465v1 27
chrUn_KI270466v1 2218
chrUn_KI270467v1 6416
chrUn_KI270468v1 203
chrUn_KI270507v1 374
chrUn_KI270508v1 215
chrUn_KI270509v1 186
chrUn_KI270510v1 130
chrUn_KI270511v1 313
chrUn_KI270512v1 562
chrUn_KI270515v1 519
chrUn_KI270516v1 104
chrUn_KI270517v1 260
chrUn_KI270518v1 148
chrUn_KI270519v1 4147
chrUn_KI270521v1 192
chrUn_KI270522v1 93
chrUn_KI270528v1 2
chrUn_KI270529v1 5
chrUn_KI270530v1 21
chrUn_KI270538v1 3224
chrUn_KI270539v1 24
chrUn_KI270544v1 13
chrUn_KI270579v1 22
chrUn_KI270580v1 139
chrUn_KI270581v1 11
chrUn_KI270582v1 38
chrUn_KI270583v1 135
chrUn_KI270584v1 411
chrUn_KI270587v1 1070
chrUn_KI270588v1 348
chrUn_KI270589v1 482
chrUn_KI270590v1 310
chrUn_KI270591v1 488
chrUn_KI270593v1 126
chrUn_KI270741v1 166
chrUn_KI270742v1 3866
chrUn_KI270743v1 2809
chrUn_KI270744v1 7353
chrUn_KI270745v1 374
chrUn_KI270746v1 4347
chrUn_KI270747v1 382
chrUn_KI270748v1 309
chrUn_KI270749v1 3890
chrUn_KI270750v1 5534
chrUn_KI270751v1 5665
chrUn_KI270753v1 531
chrUn_KI270754v1 802
chrUn_KI270755v1 440
chrUn_KI270756v1 733
chrUn_KI270757v1 1789
chrX 13045894
chrY 65149
chrY_KI270740v1_random 36

Fragment lengths

fragments min max mean median
fragments 448397887 7 1992 243.91 171
global fragment-length histogram

Files

Filename Size md5
T88_b17_Spleen_PCW18.fragments.tsv.gz 4.1 GB 57e1fbce3f33e87544a1889d2eac9526
T88_b17_Spleen_PCW18.fragments.tsv.gz.tbi 1.58 MB a7acbebeb6203c7d9e9705969bbbbbe7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB db96460d89bc7f5b0597147df6875ae5
statistics/