Resource

Id summary/liu2026Multiomics/atac_fragments/T90_b17_Thymus_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T90_b17_Thymus_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 17
  • modalities: ATAC
  • organ: Thymus
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T90_b17_Thymus_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T90
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL124_F09+E05+G05, CL130_F11+B03+C03, CL126_F11+D02+G01, CL119_F03+C10+C10, CL130_F10+C03+E05 (top 5 of 1766960 values)
count int

count
HISTOGRAM FOR count [1, 26]
n
601,405,437
mean
2.14
sd
1.7

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 601405437
chr1 54979011
chr1_KI270706v1_random 3154
chr1_KI270707v1_random 479
chr1_KI270708v1_random 1516
chr1_KI270709v1_random 3729
chr1_KI270710v1_random 453
chr1_KI270711v1_random 2302
chr1_KI270712v1_random 1346
chr1_KI270713v1_random 17104
chr1_KI270714v1_random 3367
chr2 47508389
chr2_KI270715v1_random 183
chr2_KI270716v1_random 347
chr3 38405204
chr3_GL000221v1_random 601
chr4 28216969
chr4_GL000008v2_random 4382
chr5 30764615
chr5_GL000208v1_random 2185
chr6 35282484
chr7 30682562
chr8 24416897
chr9 24519557
chr9_KI270717v1_random 396
chr9_KI270718v1_random 441
chr9_KI270719v1_random 3928
chr9_KI270720v1_random 1552
chr10 26812346
chr11 30031890
chr11_KI270721v1_random 1196
chr12 30566724
chr13 15440736
chr14 19856321
chr14_GL000009v2_random 2992
chr14_GL000194v1_random 3674
chr14_GL000225v1_random 9748
chr14_KI270722v1_random 1870
chr14_KI270723v1_random 875
chr14_KI270724v1_random 848
chr14_KI270725v1_random 3393
chr14_KI270726v1_random 1007
chr15 17883398
chr15_KI270727v1_random 1440
chr16 22172144
chr16_KI270728v1_random 1851
chr17 29334025
chr17_GL000205v2_random 45802
chr17_KI270729v1_random 4522
chr17_KI270730v1_random 1116
chr18 11553395
chr19 28557482
chr20 14440522
chr21 7437815
chr22 12682200
chr22_KI270731v1_random 400
chr22_KI270732v1_random 1864
chr22_KI270733v1_random 95622
chr22_KI270734v1_random 1168
chr22_KI270735v1_random 2718
chr22_KI270736v1_random 3374
chr22_KI270737v1_random 531
chr22_KI270738v1_random 1478
chr22_KI270739v1_random 29
chrM 3884763
chrUn_GL000195v1 55460
chrUn_GL000213v1 63
chrUn_GL000214v1 1218
chrUn_GL000216v2 4283
chrUn_GL000218v1 3577
chrUn_GL000219v1 40425
chrUn_GL000220v1 10940
chrUn_GL000224v1 6564
chrUn_GL000226v1 14
chrUn_KI270302v1 16
chrUn_KI270303v1 20
chrUn_KI270304v1 25
chrUn_KI270305v1 13
chrUn_KI270310v1 61
chrUn_KI270311v1 30
chrUn_KI270312v1 2
chrUn_KI270315v1 5
chrUn_KI270316v1 2
chrUn_KI270317v1 2
chrUn_KI270320v1 35
chrUn_KI270322v1 33
chrUn_KI270330v1 225
chrUn_KI270333v1 226
chrUn_KI270336v1 113
chrUn_KI270337v1 354
chrUn_KI270362v1 31
chrUn_KI270363v1 27
chrUn_KI270366v1 24
chrUn_KI270378v1 4
chrUn_KI270382v1 19
chrUn_KI270383v1 3
chrUn_KI270384v1 16
chrUn_KI270385v1 4
chrUn_KI270386v1 1
chrUn_KI270388v1 5
chrUn_KI270389v1 1
chrUn_KI270390v1 3
chrUn_KI270392v1 8
chrUn_KI270393v1 39
chrUn_KI270394v1 5
chrUn_KI270395v1 9
chrUn_KI270396v1 1
chrUn_KI270411v1 11
chrUn_KI270412v1 7
chrUn_KI270414v1 2
chrUn_KI270417v1 67
chrUn_KI270418v1 14
chrUn_KI270419v1 5
chrUn_KI270420v1 36
chrUn_KI270422v1 35
chrUn_KI270423v1 11
chrUn_KI270424v1 4
chrUn_KI270429v1 122
chrUn_KI270435v1 2318
chrUn_KI270438v1 14751
chrUn_KI270442v1 14744
chrUn_KI270448v1 293
chrUn_KI270465v1 18
chrUn_KI270466v1 2815
chrUn_KI270467v1 7685
chrUn_KI270468v1 187
chrUn_KI270507v1 321
chrUn_KI270508v1 169
chrUn_KI270509v1 140
chrUn_KI270510v1 104
chrUn_KI270511v1 276
chrUn_KI270512v1 365
chrUn_KI270515v1 328
chrUn_KI270516v1 77
chrUn_KI270517v1 212
chrUn_KI270518v1 119
chrUn_KI270519v1 3361
chrUn_KI270521v1 147
chrUn_KI270522v1 80
chrUn_KI270528v1 1
chrUn_KI270529v1 12
chrUn_KI270530v1 27
chrUn_KI270538v1 2905
chrUn_KI270539v1 10
chrUn_KI270544v1 12
chrUn_KI270579v1 13
chrUn_KI270580v1 124
chrUn_KI270581v1 5
chrUn_KI270582v1 35
chrUn_KI270583v1 117
chrUn_KI270584v1 308
chrUn_KI270587v1 756
chrUn_KI270588v1 274
chrUn_KI270589v1 361
chrUn_KI270590v1 238
chrUn_KI270591v1 360
chrUn_KI270593v1 122
chrUn_KI270741v1 135
chrUn_KI270742v1 2898
chrUn_KI270743v1 1973
chrUn_KI270744v1 4865
chrUn_KI270745v1 287
chrUn_KI270746v1 3880
chrUn_KI270747v1 362
chrUn_KI270748v1 243
chrUn_KI270749v1 3530
chrUn_KI270750v1 4818
chrUn_KI270751v1 3819
chrUn_KI270753v1 436
chrUn_KI270754v1 596
chrUn_KI270755v1 292
chrUn_KI270756v1 586
chrUn_KI270757v1 1381
chrX 15458258
chrY 74189
chrY_KI270740v1_random 47

Fragment lengths

fragments min max mean median
fragments 601405437 7 1992 249.2 180
global fragment-length histogram

Files

Filename Size md5
T90_b17_Thymus_PCW18.fragments.tsv.gz 5.36 GB 00dd8fa30c8f8ccad86df20db104641a
T90_b17_Thymus_PCW18.fragments.tsv.gz.tbi 1.75 MB b330b5bb81e4c3f891d2dc7dbe74c29f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 40da41dce8e2e1ca54545a90705f1b74
statistics/