Resource

Id summary/liu2026Multiomics/atac_fragments/T92_b11_Heart_PCW18content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T92_b11_Heart_PCW18 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 11
  • modalities: ATAC
  • organ: Heart
  • pcw_age: 18
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T92_b11_Heart_PCW18
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T92
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell

HISTOGRAM FOR cell CL73_D02+B10+D02, CL73_D04+C09+A06, CL74_D04+E07+H04, CL76_D07+C10+G04, CL76_D05+D04+C08 (top 5 of 884736 values)
count int

count

HISTOGRAM FOR count [1, 15]
n
307,422,373
mean
1.22
sd
0.53

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 307422373
chr1 28095863
chr1_KI270706v1_random 1536
chr1_KI270707v1_random 254
chr1_KI270708v1_random 611
chr1_KI270709v1_random 1671
chr1_KI270710v1_random 241
chr1_KI270711v1_random 796
chr1_KI270712v1_random 815
chr1_KI270713v1_random 8299
chr1_KI270714v1_random 1598
chr2 23881521
chr2_KI270715v1_random 50
chr2_KI270716v1_random 227
chr3 19969927
chr3_GL000221v1_random 258
chr4 15471120
chr4_GL000008v2_random 2662
chr5 16984290
chr5_GL000208v1_random 1112
chr6 17315675
chr7 15418431
chr8 13575685
chr9 12487725
chr9_KI270717v1_random 157
chr9_KI270718v1_random 161
chr9_KI270719v1_random 1552
chr9_KI270720v1_random 699
chr10 14788348
chr11 15714801
chr11_KI270721v1_random 1072
chr12 14899031
chr13 8041405
chr14 9366815
chr14_GL000009v2_random 1404
chr14_GL000194v1_random 1996
chr14_GL000225v1_random 7199
chr14_KI270722v1_random 919
chr14_KI270723v1_random 563
chr14_KI270724v1_random 520
chr14_KI270725v1_random 1275
chr14_KI270726v1_random 75
chr15 9712170
chr15_KI270727v1_random 687
chr16 9949233
chr16_KI270728v1_random 829
chr17 13489072
chr17_GL000205v2_random 17333
chr17_KI270729v1_random 4104
chr17_KI270730v1_random 868
chr18 6821938
chr19 12489375
chr20 7320843
chr21 3217926
chr22 6039688
chr22_KI270731v1_random 312
chr22_KI270732v1_random 888
chr22_KI270733v1_random 69478
chr22_KI270734v1_random 1033
chr22_KI270735v1_random 1324
chr22_KI270736v1_random 2998
chr22_KI270737v1_random 392
chr22_KI270738v1_random 1054
chr22_KI270739v1_random 22
chrM 5154065
chrUn_GL000195v1 23824
chrUn_GL000213v1 54
chrUn_GL000214v1 707
chrUn_GL000216v2 3126
chrUn_GL000218v1 2155
chrUn_GL000219v1 16421
chrUn_GL000220v1 4914
chrUn_GL000224v1 3424
chrUn_GL000226v1 6
chrUn_KI270302v1 4
chrUn_KI270303v1 8
chrUn_KI270304v1 7
chrUn_KI270305v1 7
chrUn_KI270310v1 20
chrUn_KI270311v1 23
chrUn_KI270312v1 2
chrUn_KI270315v1 6
chrUn_KI270316v1 2
chrUn_KI270317v1 3
chrUn_KI270320v1 38
chrUn_KI270322v1 24
chrUn_KI270330v1 125
chrUn_KI270333v1 104
chrUn_KI270336v1 60
chrUn_KI270337v1 166
chrUn_KI270362v1 11
chrUn_KI270363v1 16
chrUn_KI270366v1 7
chrUn_KI270374v1 1
chrUn_KI270382v1 2
chrUn_KI270384v1 4
chrUn_KI270385v1 2
chrUn_KI270388v1 3
chrUn_KI270390v1 3
chrUn_KI270392v1 2
chrUn_KI270393v1 8
chrUn_KI270394v1 1
chrUn_KI270395v1 1
chrUn_KI270411v1 7
chrUn_KI270412v1 8
chrUn_KI270417v1 30
chrUn_KI270418v1 5
chrUn_KI270419v1 3
chrUn_KI270420v1 24
chrUn_KI270422v1 30
chrUn_KI270423v1 4
chrUn_KI270424v1 1
chrUn_KI270429v1 59
chrUn_KI270435v1 1262
chrUn_KI270438v1 13319
chrUn_KI270442v1 9014
chrUn_KI270448v1 168
chrUn_KI270465v1 34
chrUn_KI270466v1 959
chrUn_KI270467v1 2872
chrUn_KI270468v1 86
chrUn_KI270507v1 204
chrUn_KI270508v1 92
chrUn_KI270509v1 83
chrUn_KI270510v1 60
chrUn_KI270511v1 141
chrUn_KI270512v1 234
chrUn_KI270515v1 230
chrUn_KI270516v1 44
chrUn_KI270517v1 123
chrUn_KI270518v1 58
chrUn_KI270519v1 1876
chrUn_KI270521v1 70
chrUn_KI270522v1 35
chrUn_KI270529v1 1
chrUn_KI270530v1 5
chrUn_KI270538v1 1530
chrUn_KI270539v1 2
chrUn_KI270544v1 4
chrUn_KI270579v1 16
chrUn_KI270580v1 66
chrUn_KI270581v1 4
chrUn_KI270582v1 19
chrUn_KI270583v1 58
chrUn_KI270584v1 151
chrUn_KI270587v1 401
chrUn_KI270588v1 174
chrUn_KI270589v1 202
chrUn_KI270590v1 146
chrUn_KI270591v1 208
chrUn_KI270593v1 46
chrUn_KI270741v1 74
chrUn_KI270742v1 1308
chrUn_KI270743v1 1042
chrUn_KI270744v1 2693
chrUn_KI270745v1 107
chrUn_KI270746v1 1527
chrUn_KI270747v1 178
chrUn_KI270748v1 131
chrUn_KI270749v1 1344
chrUn_KI270750v1 1923
chrUn_KI270751v1 2074
chrUn_KI270753v1 214
chrUn_KI270754v1 377
chrUn_KI270755v1 170
chrUn_KI270756v1 568
chrUn_KI270757v1 803
chrX 6887732
chrY 86614
chrY_KI270740v1_random 44

Fragment lengths

fragments min max mean median
fragments 307422373 7 1992 220.63 156
global fragment-length histogram

Files

Filename Size md5
T92_b11_Heart_PCW18.fragments.tsv.gz 2.72 GB 0a4a7ca0f1885ccc7cfb45d3f0350860
T92_b11_Heart_PCW18.fragments.tsv.gz.tbi 1.23 MB 7b8ab0a7578941f8e20bd705c34bc1af
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB d5129f08e3347d7fc3a57334b61ef6bc
statistics/