Resource

Id summary/liu2026Multiomics/atac_fragments/T94_b4_Brain_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T94_b4_Brain_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 4
  • modalities: ATAC
  • organ: Brain
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T94_b4_Brain_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T94
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL32_D06+A03+E07, CL28_D11+G03+H05, CL25_D08+F12+H07, CL29_D08+E07+B02, CL30_D04+G09+A08 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 30]
n
179,924,404
mean
1.88
sd
1.67

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 179924404
chr1 15576256
chr1_KI270706v1_random 356
chr1_KI270707v1_random 52
chr1_KI270708v1_random 185
chr1_KI270709v1_random 994
chr1_KI270710v1_random 105
chr1_KI270711v1_random 844
chr1_KI270712v1_random 641
chr1_KI270713v1_random 5101
chr1_KI270714v1_random 1823
chr2 13906934
chr2_KI270715v1_random 29
chr2_KI270716v1_random 87
chr3 11059316
chr3_GL000221v1_random 184
chr4 8880934
chr4_GL000008v2_random 1437
chr5 9723406
chr5_GL000208v1_random 649
chr6 9830617
chr7 9219177
chr8 8197292
chr9 7426415
chr9_KI270717v1_random 140
chr9_KI270718v1_random 174
chr9_KI270719v1_random 919
chr9_KI270720v1_random 468
chr10 7809924
chr11 9180939
chr11_KI270721v1_random 105
chr12 8465085
chr13 4753863
chr14 5626327
chr14_GL000009v2_random 1087
chr14_GL000194v1_random 1358
chr14_GL000225v1_random 4813
chr14_KI270722v1_random 1004
chr14_KI270723v1_random 459
chr14_KI270724v1_random 199
chr14_KI270725v1_random 637
chr14_KI270726v1_random 23
chr15 5039751
chr15_KI270727v1_random 324
chr16 5918390
chr16_KI270728v1_random 331
chr17 7457692
chr17_GL000205v2_random 12158
chr17_KI270729v1_random 1725
chr17_KI270730v1_random 559
chr18 3951205
chr19 7124344
chr20 4339610
chr21 1919771
chr22 3536116
chr22_KI270731v1_random 189
chr22_KI270732v1_random 647
chr22_KI270733v1_random 15728
chr22_KI270734v1_random 185
chr22_KI270735v1_random 732
chr22_KI270736v1_random 1654
chr22_KI270737v1_random 219
chr22_KI270738v1_random 613
chr22_KI270739v1_random 11
chrM 6066489
chrUn_GL000195v1 12920
chrUn_GL000213v1 136
chrUn_GL000214v1 343
chrUn_GL000216v2 1031
chrUn_GL000218v1 1153
chrUn_GL000219v1 4535
chrUn_GL000220v1 2676
chrUn_GL000224v1 1873
chrUn_GL000226v1 2
chrUn_KI270302v1 5
chrUn_KI270303v1 4
chrUn_KI270304v1 2
chrUn_KI270305v1 7
chrUn_KI270310v1 2
chrUn_KI270311v1 8
chrUn_KI270315v1 2
chrUn_KI270320v1 16
chrUn_KI270322v1 21
chrUn_KI270329v1 4
chrUn_KI270330v1 63
chrUn_KI270333v1 42
chrUn_KI270336v1 36
chrUn_KI270337v1 46
chrUn_KI270362v1 2
chrUn_KI270363v1 7
chrUn_KI270366v1 5
chrUn_KI270382v1 5
chrUn_KI270384v1 1
chrUn_KI270390v1 2
chrUn_KI270392v1 1
chrUn_KI270394v1 1
chrUn_KI270411v1 8
chrUn_KI270412v1 2
chrUn_KI270414v1 1
chrUn_KI270417v1 18
chrUn_KI270418v1 3
chrUn_KI270420v1 9
chrUn_KI270422v1 1
chrUn_KI270429v1 32
chrUn_KI270435v1 685
chrUn_KI270438v1 6021
chrUn_KI270442v1 4894
chrUn_KI270448v1 96
chrUn_KI270465v1 18
chrUn_KI270466v1 339
chrUn_KI270467v1 1769
chrUn_KI270468v1 68
chrUn_KI270507v1 108
chrUn_KI270508v1 39
chrUn_KI270509v1 30
chrUn_KI270510v1 30
chrUn_KI270511v1 91
chrUn_KI270512v1 124
chrUn_KI270515v1 106
chrUn_KI270516v1 31
chrUn_KI270517v1 44
chrUn_KI270518v1 40
chrUn_KI270519v1 944
chrUn_KI270521v1 26
chrUn_KI270522v1 18
chrUn_KI270529v1 1
chrUn_KI270530v1 1
chrUn_KI270538v1 746
chrUn_KI270539v1 7
chrUn_KI270544v1 2
chrUn_KI270579v1 5
chrUn_KI270580v1 27
chrUn_KI270581v1 2
chrUn_KI270582v1 11
chrUn_KI270583v1 41
chrUn_KI270584v1 73
chrUn_KI270587v1 184
chrUn_KI270588v1 79
chrUn_KI270589v1 118
chrUn_KI270590v1 69
chrUn_KI270591v1 118
chrUn_KI270593v1 31
chrUn_KI270741v1 22
chrUn_KI270742v1 852
chrUn_KI270743v1 519
chrUn_KI270744v1 1808
chrUn_KI270745v1 72
chrUn_KI270746v1 831
chrUn_KI270747v1 106
chrUn_KI270748v1 46
chrUn_KI270749v1 905
chrUn_KI270750v1 1244
chrUn_KI270751v1 962
chrUn_KI270753v1 117
chrUn_KI270754v1 292
chrUn_KI270755v1 98
chrUn_KI270756v1 291
chrUn_KI270757v1 399
chrX 4778316
chrY 26646
chrY_KI270740v1_random 16

Fragment lengths

fragments min max mean median
fragments 179924404 7 1992 264.22 199
global fragment-length histogram

Files

Filename Size md5
T94_b4_Brain_PCW17.fragments.tsv.gz 1.6 GB ab02c0f836d08c9caad2fdaeadfc7521
T94_b4_Brain_PCW17.fragments.tsv.gz.tbi 966.7 KB 51151770c69506b85162b2c3e553ccb1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB e21584f5c1a5c9fdccdf9d9b64077796
statistics/