Resource

Id summary/liu2026Multiomics/atac_fragments/T96_b9_Muscle_PCW17content_copy
Type fragment_score
Version 0
Summary Sample ATAC fragments for T96_b9_Muscle_PCW17 from liu2026Multiomics.
Description
Labels
  • assay: SHARE-seq
  • cell_meta_resource_id: summary/liu2026Multiomics/SHARE_seq_cell_meta_data
  • data_types: fragments
  • dataset: liu2026Multiomics
  • exp_batch: 9
  • modalities: ATAC
  • organ: Muscle
  • pcw_age: 17
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_cell
  • sample_id: T96_b9_Muscle_PCW17
  • sequencing_platform: Illumina
  • species: human
  • tissue_storage_code: T96
  • vendor: unknown

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CL60_C06+E11+A10, CL59_C10+C05+E12, CL62_C05+E08+B09, CL60_C05+A02+B05, CL63_C08+H07+A09 (top 5 of 884736 values)
count int

count
HISTOGRAM FOR count [1, 33]
n
356,760,738
mean
1.24
sd
0.561

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 356760738
chr1 29417480
chr1_KI270706v1_random 1124
chr1_KI270707v1_random 164
chr1_KI270708v1_random 552
chr1_KI270709v1_random 7793
chr1_KI270710v1_random 470
chr1_KI270711v1_random 1962
chr1_KI270712v1_random 2245
chr1_KI270713v1_random 8244
chr1_KI270714v1_random 2367
chr2 29663831
chr2_KI270715v1_random 149
chr2_KI270716v1_random 1067
chr3 24885888
chr3_GL000221v1_random 1003
chr4 22549120
chr4_GL000008v2_random 7133
chr5 21712974
chr5_GL000208v1_random 5338
chr6 21624392
chr7 19390299
chr8 17368363
chr9 14235440
chr9_KI270717v1_random 233
chr9_KI270718v1_random 456
chr9_KI270719v1_random 4298
chr9_KI270720v1_random 2548
chr10 16106076
chr11 17369227
chr11_KI270721v1_random 467
chr12 17172406
chr13 11201919
chr14 11090001
chr14_GL000009v2_random 5797
chr14_GL000194v1_random 5041
chr14_GL000225v1_random 20157
chr14_KI270722v1_random 5487
chr14_KI270723v1_random 1732
chr14_KI270724v1_random 732
chr14_KI270725v1_random 3296
chr14_KI270726v1_random 123
chr15 9402638
chr15_KI270727v1_random 1164
chr16 9970447
chr16_KI270728v1_random 1100
chr17 11402735
chr17_GL000205v2_random 23827
chr17_KI270729v1_random 24486
chr17_KI270730v1_random 4628
chr18 8669829
chr19 9769362
chr20 7416029
chr21 4152195
chr22 4611975
chr22_KI270731v1_random 316
chr22_KI270732v1_random 3943
chr22_KI270733v1_random 18119
chr22_KI270734v1_random 412
chr22_KI270735v1_random 5170
chr22_KI270736v1_random 8349
chr22_KI270737v1_random 2358
chr22_KI270738v1_random 6909
chr22_KI270739v1_random 133
chrM 3684854
chrUn_GL000195v1 14484
chrUn_GL000213v1 609
chrUn_GL000214v1 1261
chrUn_GL000216v2 6448
chrUn_GL000218v1 5620
chrUn_GL000219v1 12793
chrUn_GL000220v1 3708
chrUn_GL000224v1 8861
chrUn_GL000226v1 3
chrUn_KI270302v1 23
chrUn_KI270303v1 25
chrUn_KI270304v1 30
chrUn_KI270305v1 18
chrUn_KI270310v1 24
chrUn_KI270311v1 60
chrUn_KI270312v1 2
chrUn_KI270315v1 3
chrUn_KI270316v1 2
chrUn_KI270317v1 11
chrUn_KI270320v1 184
chrUn_KI270322v1 119
chrUn_KI270329v1 13
chrUn_KI270330v1 311
chrUn_KI270333v1 372
chrUn_KI270335v1 1
chrUn_KI270336v1 243
chrUn_KI270337v1 372
chrUn_KI270362v1 72
chrUn_KI270363v1 34
chrUn_KI270364v1 2
chrUn_KI270366v1 42
chrUn_KI270374v1 3
chrUn_KI270378v1 11
chrUn_KI270382v1 23
chrUn_KI270383v1 2
chrUn_KI270384v1 8
chrUn_KI270385v1 2
chrUn_KI270386v1 1
chrUn_KI270387v1 1
chrUn_KI270389v1 13
chrUn_KI270390v1 4
chrUn_KI270392v1 8
chrUn_KI270393v1 7
chrUn_KI270394v1 5
chrUn_KI270395v1 4
chrUn_KI270411v1 25
chrUn_KI270412v1 21
chrUn_KI270414v1 7
chrUn_KI270417v1 178
chrUn_KI270418v1 20
chrUn_KI270419v1 1
chrUn_KI270420v1 85
chrUn_KI270422v1 40
chrUn_KI270423v1 10
chrUn_KI270424v1 11
chrUn_KI270425v1 8
chrUn_KI270429v1 292
chrUn_KI270435v1 6140
chrUn_KI270438v1 92756
chrUn_KI270442v1 34513
chrUn_KI270448v1 840
chrUn_KI270465v1 176
chrUn_KI270466v1 4229
chrUn_KI270467v1 20656
chrUn_KI270468v1 584
chrUn_KI270507v1 755
chrUn_KI270508v1 252
chrUn_KI270509v1 354
chrUn_KI270510v1 225
chrUn_KI270511v1 700
chrUn_KI270512v1 1099
chrUn_KI270515v1 945
chrUn_KI270516v1 187
chrUn_KI270517v1 453
chrUn_KI270518v1 260
chrUn_KI270519v1 8985
chrUn_KI270521v1 336
chrUn_KI270522v1 195
chrUn_KI270528v1 8
chrUn_KI270529v1 15
chrUn_KI270530v1 18
chrUn_KI270538v1 6114
chrUn_KI270539v1 20
chrUn_KI270544v1 30
chrUn_KI270579v1 27
chrUn_KI270580v1 226
chrUn_KI270581v1 4
chrUn_KI270582v1 65
chrUn_KI270583v1 181
chrUn_KI270584v1 693
chrUn_KI270587v1 1745
chrUn_KI270588v1 800
chrUn_KI270589v1 726
chrUn_KI270590v1 565
chrUn_KI270591v1 822
chrUn_KI270593v1 270
chrUn_KI270741v1 134
chrUn_KI270742v1 4001
chrUn_KI270743v1 2140
chrUn_KI270744v1 7270
chrUn_KI270745v1 216
chrUn_KI270746v1 5799
chrUn_KI270747v1 582
chrUn_KI270748v1 137
chrUn_KI270749v1 6049
chrUn_KI270750v1 7147
chrUn_KI270751v1 7672
chrUn_KI270753v1 498
chrUn_KI270754v1 707
chrUn_KI270755v1 280
chrUn_KI270756v1 3395
chrUn_KI270757v1 3361
chrX 13344067
chrY 65383
chrY_KI270740v1_random 19

Fragment lengths

fragments min max mean median
fragments 356760738 7 1992 273.73 222
global fragment-length histogram

Files

Filename Size md5
T96_b9_Muscle_PCW17.fragments.tsv.gz 3.37 GB 7d6adb3f31268f14e86fb4aa0fe509ea
T96_b9_Muscle_PCW17.fragments.tsv.gz.tbi 1.34 MB 76a1777193d17a096ce309889eb64206
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.44 KB 2431da4d4b0dc756637253ae134b4f97
statistics/