Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Adrenal/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Adrenal for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Adrenal_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Adrenal
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Adrenal_c1_mean_counts_contribs float

liu2026Multiomics_Adrenal_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Adrenal_c1_mean_counts_contribs [-0.0308, 0.0687]
n
87,576,176
mean
3.97e-05
sd
0.0027

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 875761762.73% 86757136
chr1 8267896 3.32% 8190961
chr2 6813614 2.81% 6748800
chr3 5583573 2.82% 5529638
chr4 3846594 2.02% 3806991
chr5 4541570 2.50% 4498083
chr6 4961810 2.90% 4914632
chr7 4600059 2.89% 4556151
chr8 3793099 2.61% 3756743
chr9 3771702 2.73% 3737110
chr10 3901702 2.92% 3864047
chr11 4671502 3.46% 4628572
chr12 4290616 3.22% 4250568
chr13 2234135 1.95% 2212263
chr14 2781457 2.60% 2755776
chr15 2845294 2.79% 2819165
chr16 3139872 3.48% 3112400
chr17 4135513 4.97% 4099822
chr18 1824127 2.27% 1805924
chr19 4102083 7.00% 4068171
chr20 2431267 3.77% 2409292
chr21 922309 1.97% 913240
chr22 1859721 3.66% 1843479
chrX 2254547 1.44% 2233213
chrY 2114 <0.01% 2095
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86757136 1 997 1.01 1
global segment-length histogram

Files

Filename Size md5
Adrenal_c1__mean_counts_contribs.bw 537.76 MB a6cf4a09c812832e1a5da0b7f6537ce5
genomic_resource.yaml 1.32 KB 70885bdcc06451e65f0155f93355a653
statistics/