Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Adrenal/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Adrenal for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Adrenal_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Adrenal
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Adrenal_c2_mean_counts_contribs float

liu2026Multiomics_Adrenal_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Adrenal_c2_mean_counts_contribs [-0.0539, 0.138]
n
132,653,880
mean
0.000196
sd
0.00397

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1326538804.13% 131666581
chr1 12434420 4.99% 12340771
chr2 10585946 4.37% 10507583
chr3 8831126 4.45% 8764358
chr4 6459653 3.40% 6409800
chr5 7374343 4.06% 7319644
chr6 7815625 4.58% 7756732
chr7 7000118 4.39% 6947581
chr8 6071307 4.18% 6025939
chr9 5676351 4.10% 5634611
chr10 6216605 4.65% 6170259
chr11 6772263 5.01% 6722504
chr12 6546820 4.91% 6498334
chr13 3770219 3.30% 3741681
chr14 4294870 4.01% 4262905
chr15 4165634 4.08% 4134203
chr16 4297647 4.76% 4266938
chr17 5628111 6.76% 5587136
chr18 3054778 3.80% 3030475
chr19 4765433 8.13% 4732513
chr20 3526426 5.47% 3501055
chr21 1536714 3.29% 1525279
chr22 2540230 5.00% 2522203
chrX 3138624 2.01% 3114579
chrY 150617 0.26% 149498
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 131666581 1 949 1.01 1
global segment-length histogram

Files

Filename Size md5
Adrenal_c2__mean_counts_contribs.bw 815.5 MB 824927e2013f7330494fed74fe2ec17c
genomic_resource.yaml 1.32 KB efd7dd32e40f800b5040f666ab18267c
statistics/