Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c0_mean_counts_contribs float

liu2026Multiomics_Brain_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c0_mean_counts_contribs [-0.0765, 0.28]
n
163,524,653
mean
0.000412
sd
0.00501

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1635246535.10% 162584600
chr1 15019048 6.03% 14932868
chr2 13511395 5.58% 13434162
chr3 10507887 5.30% 10447266
chr4 7674053 4.03% 7627160
chr5 9036751 4.98% 8984979
chr6 9196752 5.38% 9143780
chr7 8911595 5.59% 8860304
chr8 7778894 5.36% 7734003
chr9 6962590 5.03% 6922398
chr10 7621181 5.70% 7577297
chr11 8796185 6.51% 8747089
chr12 8114780 6.09% 8068501
chr13 4299432 3.76% 4274353
chr14 5376531 5.02% 5346235
chr15 5137127 5.04% 5107791
chr16 5479982 6.07% 5449453
chr17 6954854 8.35% 6915987
chr18 3988276 4.96% 3963721
chr19 5361013 9.15% 5331424
chr20 4567706 7.09% 4542277
chr21 1745528 3.74% 1735474
chr22 3302391 6.50% 3284226
chrX 4152763 2.66% 4128177
chrY 27939 0.05% 25675
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162584600 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c0__mean_counts_contribs.bw 1006.81 MB 2aef12f66f795e181b70881dec771e2a
genomic_resource.yaml 1.31 KB 1e5ca2bdd8dffcdfd45ff8478389350b
statistics/