Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c1_mean_counts_contribs float

liu2026Multiomics_Brain_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c1_mean_counts_contribs [-0.0687, 0.204]
n
245,092,772
mean
0.000288
sd
0.00388

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2450927727.64% 243729770
chr1 22875031 9.19% 22750547
chr2 20578430 8.50% 20463074
chr3 16112421 8.13% 16021231
chr4 11198211 5.89% 11131141
chr5 13499974 7.44% 13423165
chr6 14258718 8.35% 14179139
chr7 13143320 8.25% 13069787
chr8 11739295 8.09% 11673688
chr9 10515220 7.60% 10456770
chr10 11819252 8.83% 11753041
chr11 13256279 9.81% 13185419
chr12 11622859 8.72% 11558411
chr13 6444593 5.64% 6407835
chr14 7970133 7.45% 7926286
chr15 7809477 7.66% 7766694
chr16 8272595 9.16% 8227764
chr17 10406573 12.50% 10351937
chr18 5710809 7.11% 5676977
chr19 7855948 13.40% 7815737
chr20 6771226 10.51% 6735107
chr21 2701446 5.78% 2684852
chr22 5029604 9.90% 5003881
chrX 5418212 3.47% 5387985
chrY 83146 0.15% 79302
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 243729770 1 2564 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c1__mean_counts_contribs.bw 1.47 GB 7ebc92128a4ea26732852c8c05fc78a3
genomic_resource.yaml 1.31 KB 077d6c567e4cbde0e9eaa8fd06a3a5a9
statistics/