Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c1/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c1
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c1_mean_pred_corrected float

liu2026Multiomics_Brain_c1_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Brain_c1_mean_pred_corrected [0.000159, 121]
n
133,850,794
mean
0.502
sd
1.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1338507944.17% 133849346
chr1 12545481 5.04% 12545475
chr2 11198185 4.62% 11198179
chr3 8723914 4.40% 8723912
chr4 6040821 3.18% 6040815
chr5 7338713 4.04% 7338711
chr6 7763178 4.55% 7763172
chr7 7144551 4.48% 7144547
chr8 6372942 4.39% 6372938
chr9 5752924 4.16% 5752918
chr10 6427862 4.80% 6427861
chr11 7288079 5.40% 7288074
chr12 6330482 4.75% 6330481
chr13 3485551 3.05% 3485549
chr14 4366957 4.08% 4366957
chr15 4264863 4.18% 4264863
chr16 4534837 5.02% 4534834
chr17 5783193 6.95% 5783192
chr18 3090730 3.85% 3090727
chr19 4429160 7.56% 4429157
chr20 3703419 5.75% 3703418
chr21 1465620 3.14% 1465620
chr22 2768688 5.45% 2768687
chrX 2981545 1.91% 2981543
chrY 49099 0.09% 47716
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133849346 1 1361 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c1__mean_pred_corrected.bw 1012.91 MB 05eb171919c1cbfc1c38e60705d1508e
genomic_resource.yaml 1.27 KB 420de61d9ba57b2ecbcfaaf17af4a4ad
statistics/