Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c10_mean_counts_contribs float

liu2026Multiomics_Brain_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c10_mean_counts_contribs [-0.0464, 0.118]
n
87,429,538
mean
0.000132
sd
0.00353

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 874295382.72% 86830660
chr1 8386785 3.37% 8328791
chr2 6988845 2.89% 6940723
chr3 5498475 2.77% 5460514
chr4 3692002 1.94% 3665437
chr5 4607700 2.54% 4576202
chr6 4862217 2.85% 4829451
chr7 4620691 2.90% 4589317
chr8 3914538 2.70% 3888031
chr9 3619271 2.62% 3594654
chr10 3860859 2.89% 3834354
chr11 4876648 3.61% 4843731
chr12 4421480 3.32% 4391519
chr13 2117224 1.85% 2102732
chr14 2939180 2.75% 2919512
chr15 2803533 2.75% 2784472
chr16 3103863 3.44% 3083374
chr17 4089299 4.91% 4062287
chr18 1887373 2.35% 1872576
chr19 3856172 6.58% 3830936
chr20 2422809 3.76% 2406729
chr21 799063 1.71% 793757
chr22 1906108 3.75% 1893499
chrX 2134622 1.37% 2119505
chrY 20781 0.04% 18557
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86830660 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c10__mean_counts_contribs.bw 537.93 MB cbd0912eb9cd9677269e950a859aaa39
genomic_resource.yaml 1.31 KB 28906a86e064d4d3deaad4d1d7e70e67
statistics/