Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c11_mean_counts_contribs float

liu2026Multiomics_Brain_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c11_mean_counts_contribs [-0.0651, 0.135]
n
110,408,712
mean
0.000162
sd
0.00359

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1104087123.44% 109614979
chr1 10452690 4.20% 10377498
chr2 8759981 3.62% 8696830
chr3 7002415 3.53% 6951278
chr4 4606214 2.42% 4571760
chr5 5905330 3.25% 5862852
chr6 6355154 3.72% 6309599
chr7 5536929 3.47% 5496829
chr8 4735261 3.26% 4700880
chr9 4775265 3.45% 4741286
chr10 5488651 4.10% 5448049
chr11 6065607 4.49% 6023134
chr12 5244623 3.94% 5206868
chr13 2522803 2.21% 2504375
chr14 3429083 3.20% 3404860
chr15 3762842 3.69% 3735631
chr16 3956597 4.38% 3929188
chr17 5510060 6.62% 5471334
chr18 2395316 2.98% 2376357
chr19 4636109 7.91% 4604832
chr20 3162533 4.91% 3140351
chr21 1219935 2.61% 1210218
chr22 2237558 4.40% 2221966
chrX 2577013 1.65% 2558743
chrY 70743 0.12% 70261
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109614979 1 1001 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c11__mean_counts_contribs.bw 680.17 MB 61e6272bcf160190e39998a063bfa80f
genomic_resource.yaml 1.31 KB 020d9c473a7af12fafff5aa7933a28f6
statistics/