Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c12_mean_counts_contribs float

liu2026Multiomics_Brain_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c12_mean_counts_contribs [-0.0589, 0.132]
n
106,879,159
mean
0.000198
sd
0.00344

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1068791593.33% 106112562
chr1 10204444 4.10% 10131437
chr2 8337830 3.44% 8278154
chr3 7218948 3.64% 7167219
chr4 4815721 2.53% 4780228
chr5 5968139 3.29% 5925143
chr6 6229180 3.65% 6184847
chr7 5704339 3.58% 5663285
chr8 5290173 3.64% 5251621
chr9 4471026 3.23% 4439313
chr10 4908930 3.67% 4873239
chr11 5791929 4.29% 5751187
chr12 5162794 3.87% 5126056
chr13 2662140 2.33% 2642801
chr14 3417538 3.19% 3393162
chr15 3404171 3.34% 3380027
chr16 3595814 3.98% 3570400
chr17 4525980 5.44% 4493737
chr18 2341646 2.91% 2324867
chr19 4126000 7.04% 4098052
chr20 2807971 4.36% 2787947
chr21 1128191 2.42% 1119148
chr22 2107850 4.15% 2093052
chrX 2578768 1.65% 2560652
chrY 79637 0.14% 76988
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106112562 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c12__mean_counts_contribs.bw 657.26 MB 795be30278c04d6d8fa25a5d5b446b0a
genomic_resource.yaml 1.31 KB b95aac15962ab7c70486f1de42db99de
statistics/