Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c12/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c12
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c12_mean_pred_corrected float

liu2026Multiomics_Brain_c12_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Brain_c12_mean_pred_corrected [0.00117, 12.8]
n
56,109,157
mean
0.123
sd
0.227

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 561091571.75% 56108213
chr1 5368730 2.16% 5368727
chr2 4358482 1.80% 4358481
chr3 3755708 1.89% 3755708
chr4 2520300 1.32% 2520300
chr5 3116781 1.72% 3116781
chr6 3279266 1.92% 3279266
chr7 2975439 1.87% 2975437
chr8 2752043 1.90% 2752043
chr9 2346795 1.70% 2346795
chr10 2567149 1.92% 2567147
chr11 3058548 2.26% 3058547
chr12 2719910 2.04% 2719910
chr13 1388413 1.21% 1388413
chr14 1796271 1.68% 1796271
chr15 1786211 1.75% 1786211
chr16 1889004 2.09% 1889003
chr17 2399648 2.88% 2399647
chr18 1223776 1.52% 1223776
chr19 2248871 3.84% 2248870
chr20 1464165 2.27% 1464165
chr21 590315 1.26% 590315
chr22 1103087 2.17% 1103087
chrX 1357843 0.87% 1357842
chrY 42402 0.07% 41471
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56108213 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c12__mean_pred_corrected.bw 425.36 MB 5a252e1cf0411a47ef153e8711154721
genomic_resource.yaml 1.28 KB 123c581e586c20b179eae80e15487831
statistics/