Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c13_mean_counts_contribs float

liu2026Multiomics_Brain_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c13_mean_counts_contribs [-0.093, 0.332]
n
166,960,485
mean
0.000285
sd
0.0047

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1669604855.20% 165895198
chr1 16220900 6.52% 16118612
chr2 13531189 5.59% 13443780
chr3 10752565 5.42% 10681896
chr4 7899267 4.15% 7845005
chr5 8653757 4.77% 8596888
chr6 9771153 5.72% 9708068
chr7 8558773 5.37% 8503841
chr8 7191025 4.95% 7144241
chr9 7151562 5.17% 7106556
chr10 7960761 5.95% 7910728
chr11 8861490 6.56% 8806759
chr12 7840766 5.88% 7790116
chr13 4262869 3.73% 4234468
chr14 5529878 5.17% 5495122
chr15 5567991 5.46% 5532382
chr16 5634498 6.24% 5600896
chr17 7645433 9.18% 7599472
chr18 3535250 4.40% 3512418
chr19 6169665 10.53% 6134218
chr20 4248321 6.59% 4222457
chr21 2004851 4.29% 1991583
chr22 3530407 6.95% 3509542
chrX 4275926 2.74% 4248502
chrY 162188 0.28% 157648
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 165895198 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c13__mean_counts_contribs.bw 1.0 GB a12ed59944730396e44ddf5b4ce54fbc
genomic_resource.yaml 1.31 KB 9eef2c3bc404f503662cefbc2d8ee715
statistics/