Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c14_mean_counts_contribs float

liu2026Multiomics_Brain_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c14_mean_counts_contribs [-0.0456, 0.143]
n
84,815,152
mean
7.35e-05
sd
0.0035

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 848151522.64% 84189494
chr1 7531612 3.03% 7476055
chr2 7074425 2.92% 7021453
chr3 5545655 2.80% 5504051
chr4 4101838 2.16% 4069092
chr5 4699871 2.59% 4665450
chr6 5010607 2.93% 4974167
chr7 4522658 2.84% 4489281
chr8 3947630 2.72% 3918705
chr9 3507607 2.53% 3480350
chr10 3706145 2.77% 3678005
chr11 4512642 3.34% 4479979
chr12 4279851 3.21% 4248445
chr13 2241160 1.96% 2224653
chr14 2711116 2.53% 2691359
chr15 2615159 2.56% 2596524
chr16 2935780 3.25% 2915157
chr17 3615314 4.34% 3589816
chr18 1952524 2.43% 1936303
chr19 3364342 5.74% 3341215
chr20 2227943 3.46% 2212104
chr21 890454 1.91% 883944
chr22 1629113 3.21% 1617387
chrX 2176528 1.39% 2160910
chrY 15178 0.03% 15089
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84189494 1 972 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c14__mean_counts_contribs.bw 521.6 MB 262c9eb3d4b809e92f065df512d11742
genomic_resource.yaml 1.31 KB 674821d9f4ff74b831599891ea4f31e1
statistics/