Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c14/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c14
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c14_mean_pred_corrected float

liu2026Multiomics_Brain_c14_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Brain_c14_mean_pred_corrected [0.000898, 4.95]
n
42,813,509
mean
0.0504
sd
0.0886

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428135091.33% 42813499
chr1 3816728 1.53% 3816726
chr2 3542396 1.46% 3542396
chr3 2774232 1.40% 2774230
chr4 2053084 1.08% 2053083
chr5 2367252 1.30% 2367252
chr6 2536260 1.48% 2536260
chr7 2263213 1.42% 2263213
chr8 1981813 1.37% 1981813
chr9 1768017 1.28% 1768016
chr10 1861560 1.39% 1861560
chr11 2283382 1.69% 2283381
chr12 2160336 1.62% 2160336
chr13 1117657 0.98% 1117657
chr14 1369518 1.28% 1369518
chr15 1325671 1.30% 1325670
chr16 1489904 1.65% 1489904
chr17 1849578 2.22% 1849577
chr18 978670 1.22% 978670
chr19 1756120 3.00% 1756119
chr20 1123782 1.74% 1123782
chr21 447728 0.96% 447728
chr22 821766 1.62% 821766
chrX 1116348 0.72% 1116348
chrY 8494 0.01% 8494
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42813499 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c14__mean_pred_corrected.bw 325.1 MB 5f74594e76a92df1c79d4b22de0482c3
genomic_resource.yaml 1.28 KB dade3c6b32786f25825178c8bbcc9c82
statistics/