Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c15_mean_counts_contribs float

liu2026Multiomics_Brain_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c15_mean_counts_contribs [-0.034, 0.0776]
n
75,882,189
mean
1.68e-05
sd
0.00264

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 758821892.36% 75090344
chr1 7271164 2.92% 7195232
chr2 5924096 2.45% 5861784
chr3 4810842 2.43% 4759793
chr4 3159884 1.66% 3123754
chr5 4106754 2.26% 4062926
chr6 4347994 2.55% 4302295
chr7 3972697 2.49% 3931244
chr8 3448880 2.38% 3411910
chr9 3230319 2.33% 3197257
chr10 3356590 2.51% 3321099
chr11 4170859 3.09% 4128188
chr12 3703525 2.78% 3665285
chr13 1878534 1.64% 1858426
chr14 2565039 2.40% 2538518
chr15 2502321 2.45% 2476880
chr16 2751910 3.05% 2724682
chr17 3555396 4.27% 3519643
chr18 1499626 1.87% 1483511
chr19 3307673 5.64% 3276323
chr20 2100614 3.26% 2079205
chr21 765255 1.64% 757243
chr22 1611400 3.17% 1595386
chrX 1828133 1.17% 1809287
chrY 12684 0.02% 10473
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75090344 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c15__mean_counts_contribs.bw 465.92 MB 89f605c840dda82dac3921f33b4f436c
genomic_resource.yaml 1.31 KB 13d134e670b9258b0b88bc702306a594
statistics/