Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c15/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c15
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c15_mean_pred_corrected float

liu2026Multiomics_Brain_c15_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Brain_c15_mean_pred_corrected [0.00107, 7.71]
n
38,146,464
mean
0.0423
sd
0.0726

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 381464641.19% 38145519
chr1 3658981 1.47% 3658978
chr2 2964133 1.22% 2964131
chr3 2411514 1.22% 2411513
chr4 1584128 0.83% 1584128
chr5 2059882 1.13% 2059882
chr6 2192029 1.28% 2192029
chr7 1988357 1.25% 1988357
chr8 1714654 1.18% 1714654
chr9 1621690 1.17% 1621690
chr10 1678983 1.25% 1678983
chr11 2106923 1.56% 2106921
chr12 1866499 1.40% 1866497
chr13 937044 0.82% 937044
chr14 1285439 1.20% 1285437
chr15 1262641 1.24% 1262641
chr16 1384033 1.53% 1384033
chr17 1800727 2.16% 1800727
chr18 746020 0.93% 746020
chr19 1708109 2.91% 1708109
chr20 1051876 1.63% 1051876
chr21 384003 0.82% 384003
chr22 806125 1.59% 806125
chrX 926674 0.59% 926673
chrY 6000 0.01% 5068
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38145519 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c15__mean_pred_corrected.bw 289.24 MB 62f06408277ea25b1dba115dc21c5d01
genomic_resource.yaml 1.28 KB 944d3ebd7dc24a0c71261a7ef6ad9b23
statistics/