Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c16/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c16
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c16_mean_counts_contribs float

liu2026Multiomics_Brain_c16_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c16_mean_counts_contribs [-0.0351, 0.0919]
n
95,686,536
mean
6.78e-05
sd
0.00284

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 956865362.98% 94735622
chr1 9128082 3.67% 9037406
chr2 7550514 3.12% 7474766
chr3 6015388 3.03% 5954497
chr4 4405346 2.32% 4358941
chr5 5300342 2.92% 5246720
chr6 5659034 3.31% 5602581
chr7 5058990 3.17% 5008455
chr8 4250447 2.93% 4207940
chr9 4060427 2.93% 4020598
chr10 4490632 3.36% 4445595
chr11 5180096 3.83% 5129403
chr12 4840874 3.63% 4792971
chr13 2410067 2.11% 2385436
chr14 2885737 2.70% 2857487
chr15 3137522 3.08% 3106790
chr16 3292787 3.64% 3262006
chr17 4298880 5.16% 4258019
chr18 1958179 2.44% 1936563
chr19 3990165 6.81% 3954850
chr20 2522135 3.91% 2497610
chr21 1075855 2.30% 1065405
chr22 1874437 3.69% 1856746
chrX 2282111 1.46% 2259078
chrY 18489 0.03% 15759
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94735622 1 2585 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c16__mean_counts_contribs.bw 587.46 MB 03af533bea41a920eeba5be06231966d
genomic_resource.yaml 1.31 KB a1a602b268c4017b556c934bf079577a
statistics/