Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c16/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c16
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c16_mean_pred_corrected float

liu2026Multiomics_Brain_c16_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Brain_c16_mean_pred_corrected [0.00109, 6.66]
n
48,505,505
mean
0.0547
sd
0.101

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 485055051.51% 48504048
chr1 4638353 1.86% 4638353
chr2 3803497 1.57% 3803495
chr3 3031927 1.53% 3031926
chr4 2212532 1.16% 2212532
chr5 2682959 1.48% 2682956
chr6 2876701 1.68% 2876701
chr7 2550419 1.60% 2550418
chr8 2146526 1.48% 2146526
chr9 2050713 1.48% 2050713
chr10 2273241 1.70% 2273241
chr11 2636936 1.95% 2636934
chr12 2454087 1.84% 2454087
chr13 1210203 1.06% 1210201
chr14 1465563 1.37% 1465563
chr15 1587555 1.56% 1587555
chr16 1673365 1.85% 1673365
chr17 2200224 2.64% 2200221
chr18 983169 1.22% 983169
chr19 2093327 3.57% 2093323
chr20 1268002 1.97% 1268001
chr21 544090 1.16% 544090
chr22 952330 1.87% 952330
chrX 1160209 0.74% 1160209
chrY 9577 0.02% 8139
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48504048 1 1382 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c16__mean_pred_corrected.bw 367.68 MB 3c20b3189b1d8713b1826772abf4b14d
genomic_resource.yaml 1.28 KB 5269c06ca2c7d40d05fc34e8f3d777a8
statistics/