Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c17_mean_counts_contribs float

liu2026Multiomics_Brain_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c17_mean_counts_contribs [-0.0192, 0.0596]
n
59,435,606
mean
1.02e-05
sd
0.00234

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 594356061.85% 58734829
chr1 6863489 2.76% 6780855
chr2 4621024 1.91% 4564111
chr3 2721376 1.37% 2690305
chr4 1820803 0.96% 1799015
chr5 2231255 1.23% 2204574
chr6 2500688 1.46% 2472655
chr7 2250818 1.41% 2225451
chr8 1738570 1.20% 1718590
chr9 1862267 1.35% 1841574
chr10 3388368 2.53% 3346819
chr11 3779699 2.80% 3734068
chr12 3689222 2.77% 3643676
chr13 2021585 1.77% 1995122
chr14 2452165 2.29% 2421924
chr15 2268289 2.22% 2241414
chr16 2540271 2.81% 2512054
chr17 3075756 3.69% 3041895
chr18 1734227 2.16% 1711134
chr19 3074938 5.25% 3043137
chr20 1935854 3.00% 1913231
chr21 808691 1.73% 798890
chr22 961060 1.89% 951109
chrX 1086735 0.70% 1074847
chrY 8456 0.01% 8379
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58734829 1 918 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c17__mean_counts_contribs.bw 364.3 MB 3900fedccbe8f671446fca138e45b4fe
genomic_resource.yaml 1.31 KB 9845ba89ec775a156e197ae42ba8f0bb
statistics/