Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c17/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Brain for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c17
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c17_mean_pred_corrected float

liu2026Multiomics_Brain_c17_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Brain_c17_mean_pred_corrected [0.000397, 1.81]
n
28,935,622
mean
0.0151
sd
0.0249

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 289356220.90% 28935600
chr1 3331009 1.34% 3331006
chr2 2244891 0.93% 2244889
chr3 1330539 0.67% 1330537
chr4 886409 0.47% 886408
chr5 1091662 0.60% 1091661
chr6 1234476 0.72% 1234476
chr7 1099875 0.69% 1099874
chr8 847371 0.58% 847370
chr9 906551 0.66% 906551
chr10 1633758 1.22% 1633757
chr11 1834591 1.36% 1834591
chr12 1788203 1.34% 1788202
chr13 975741 0.85% 975741
chr14 1185664 1.11% 1185662
chr15 1096750 1.08% 1096749
chr16 1236683 1.37% 1236682
chr17 1507941 1.81% 1507941
chr18 834457 1.04% 834456
chr19 1528940 2.61% 1528937
chr20 938882 1.46% 938882
chr21 391938 0.84% 391938
chr22 470960 0.93% 470960
chrX 534331 0.34% 534330
chrY 4000 0.01% 4000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28935600 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Brain_c17__mean_pred_corrected.bw 218.8 MB 06ab5e608ecd2358fc199a7d2861119c
genomic_resource.yaml 1.28 KB 6b35d894c6ade2d863fa0c7f505bfa74
statistics/