Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c2_mean_counts_contribs float

liu2026Multiomics_Brain_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c2_mean_counts_contribs [-0.088, 0.164]
n
144,895,881
mean
0.000327
sd
0.00403

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1448958814.51% 143962130
chr1 13311548 5.35% 13225418
chr2 12032413 4.97% 11954710
chr3 9678544 4.88% 9615627
chr4 6980897 3.67% 6933590
chr5 8406912 4.63% 8352836
chr6 8385646 4.91% 8332335
chr7 7814562 4.90% 7764564
chr8 7032346 4.85% 6987003
chr9 6072155 4.39% 6033421
chr10 6783541 5.07% 6738378
chr11 7677344 5.68% 7629053
chr12 7112559 5.34% 7067457
chr13 3941685 3.45% 3916415
chr14 4709997 4.40% 4680318
chr15 4509882 4.42% 4480669
chr16 4778555 5.29% 4748351
chr17 5935636 7.13% 5898718
chr18 3351399 4.17% 3327867
chr19 4766620 8.13% 4738308
chr20 3689476 5.73% 3666367
chr21 1587480 3.40% 1576757
chr22 2714853 5.34% 2697975
chrX 3596960 2.31% 3573378
chrY 24871 0.04% 22615
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 143962130 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c2__mean_counts_contribs.bw 891.74 MB 1f426467fb997070e3470adda2038b79
genomic_resource.yaml 1.31 KB 4786725a5fbb2463eca4083c98804ac9
statistics/