Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c3_mean_counts_contribs float

liu2026Multiomics_Brain_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c3_mean_counts_contribs [-0.08, 0.208]
n
146,968,525
mean
0.000335
sd
0.00423

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1469685254.58% 146079202
chr1 13282367 5.34% 13202034
chr2 12325348 5.09% 12248975
chr3 9945317 5.02% 9884761
chr4 7233580 3.80% 7186654
chr5 8548916 4.71% 8497411
chr6 8699850 5.09% 8647444
chr7 7932707 4.98% 7884944
chr8 7252679 5.00% 7209106
chr9 6017502 4.35% 5980608
chr10 6690220 5.00% 6649164
chr11 7604233 5.63% 7560049
chr12 7347153 5.51% 7303239
chr13 4354454 3.81% 4327606
chr14 4798455 4.48% 4770305
chr15 4597633 4.51% 4570214
chr16 4720021 5.22% 4692465
chr17 5682079 6.82% 5649898
chr18 3458636 4.30% 3435453
chr19 4876625 8.32% 4849714
chr20 3708770 5.76% 3687544
chr21 1598918 3.42% 1588444
chr22 2655698 5.23% 2640773
chrX 3632671 2.33% 3610295
chrY 4693 0.01% 2102
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 146079202 1 2579 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c3__mean_counts_contribs.bw 904.35 MB 72e9f00eda109c2d2983f1981534b5ed
genomic_resource.yaml 1.31 KB 8d916c4e684f51501b145effaf82a06a
statistics/