Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Brain/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Brain for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Brain_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Brain
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Brain_c4_mean_counts_contribs float

liu2026Multiomics_Brain_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Brain_c4_mean_counts_contribs [-0.0308, 0.105]
n
85,526,609
mean
8.91e-05
sd
0.00304

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 855266092.66% 84878753
chr1 8191395 3.29% 8129068
chr2 6778436 2.80% 6727162
chr3 5380286 2.71% 5338458
chr4 3747562 1.97% 3717822
chr5 4521894 2.49% 4487356
chr6 4748625 2.78% 4712261
chr7 4516562 2.83% 4482182
chr8 3904250 2.69% 3874575
chr9 3601991 2.60% 3575091
chr10 3809676 2.85% 3780474
chr11 4762204 3.53% 4726568
chr12 4325481 3.25% 4292930
chr13 1965983 1.72% 1950944
chr14 2813013 2.63% 2792094
chr15 2707019 2.65% 2686716
chr16 3061182 3.39% 3038609
chr17 4121399 4.95% 4090832
chr18 1835484 2.28% 1820617
chr19 3637481 6.21% 3611693
chr20 2385009 3.70% 2367176
chr21 865747 1.85% 859210
chr22 1885808 3.71% 1871912
chrX 1927820 1.24% 1912957
chrY 32302 0.06% 32046
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84878753 1 951 1.01 1
global segment-length histogram

Files

Filename Size md5
Brain_c4__mean_counts_contribs.bw 525.74 MB 22437c530de82f35f65b5afe8a37a23c
genomic_resource.yaml 1.31 KB 7631080fba3e897908ae136dddd51241
statistics/